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Research Output 1990 2018

2018

Gene expression signatures characterized by longitudinal stability and interindividual variability delineate baseline phenotypic groups with distinct responses to immune stimulation

Scheid, A. D., Van Keulen, V. P., Felts, S. J., Neier, S. C., Middha, S., Nair, A. A., Techentin, R. W., Gilbert, B. K., Jen, J., Neuhauser, C., Zhang, Y. & Pease, L. R., Mar 1 2018, In : Journal of Immunology. 200, 5, p. 1917-1928 12 p.

Research output: Contribution to journalArticle

Transcriptome
Gene Expression
Population
Phenotype
Genes

Harnessing uncertainty to approximate mechanistic models of interspecific interactions

Clark, A. T. & Neuhauser, C., Sep 1 2018, In : Theoretical Population Biology. 123, p. 35-44 10 p.

Research output: Contribution to journalArticle

interspecific interaction
mechanistic models
uncertainty
prediction
coexistence
2017
6 Citations (Scopus)

Translating big data into smart data for veterinary epidemiology

VanderWaal, K., Morrison, R. B., Neuhauser, C., Vilalta, C. & Perez, A. M., Jul 17 2017, In : Frontiers in Veterinary Science. 4, JUL, 110.

Research output: Contribution to journalArticle

animal health
epidemiology
Epidemiology
Health
artificial intelligence
2016
4 Citations (Scopus)

An analytical workflow for accurate variant discovery in highly divergent regions

Tian, S., Yan, H., Neuhauser, C. & Slager, S. L., Sep 2 2016, In : BMC Genomics. 17, 1, 703.

Research output: Contribution to journalArticle

Workflow
HLA Antigens
Exome
Single Nucleotide Polymorphism
Chromosomes, Human, Pair 6
7 Citations (Scopus)

Multiplex matrix network analysis of protein complexes in the human TCR signalosome

Smith, S. E. P., Neier, S. C., Reed, B. K., Davis, T. R., Sinnwell, J. P., Eckel-Passow, J. E., Sciallis, G. F., Wieland, C. N., Torgerson, R. R., Gil, D., Neuhauser, C. & Schrum, A. G., Aug 2 2016, In : Science Signaling. 9, 439, rs7.

Research output: Contribution to journalArticle

Electric network analysis
T-Cell Antigen Receptor
Biopsy
Skin
Proteins
2015

Clinical validation of a haplotyping method with next-generation sequencing

Cradic, K. W., Murphy, S. J., Sikkink, R. A., Neuhauser, C., Vasmatzis, G. & Grebe, S. K. G., Jan 1 2015, In : Clinical Chemistry. 61, 2, p. 430-431 2 p.

Research output: Contribution to journalLetter

Steroid 21-Hydroxylase
3 Citations (Scopus)

Tipping the mutation-selection balance: Limited migration increases the frequency of deleterious mutants

Cooper, J. D., Neuhauser, C., Dean, A. M. & Kerr, B., Sep 7 2015, In : Journal of Theoretical Biology. 380, p. 123-133 11 p.

Research output: Contribution to journalArticle

Mutant
Migration
Mutation
mutation
mutants
2014
5 Citations (Scopus)

A simple method for gene phasing using mate pair sequencing

Cradic, K. W., Murphy, S. J., Drucker, T. M., Sikkink, R. A., Eberhardt, N. L., Neuhauser, C., Vasmatzis, G. & Grebe, S. K. G., Feb 6 2014, In : BMC Medical Genetics. 15, 1, 19.

Research output: Contribution to journalArticle

Alleles
Mutation
Genes
Recessive Genes
High-Throughput Nucleotide Sequencing
2013

Modeling Nature and the Nature of Modeling—An integrative modeling approach

Neuhauser, C., Jan 1 2013, Undergraduate Mathematics for the Life Sciences: Models, Processes, and Directions. Mathematical Association of America, p. 61-64 4 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Modeling
Active Learning
Computer Experiments
Linear algebra
Difference equation
2012
31 Citations (Scopus)

The interacting effects of clumped seed dispersal and distance- and density-dependent mortality on seedling recruitment patterns

Beckman, N. G., Neuhauser, C. & Muller-Landau, H. C., Jul 1 2012, In : Journal of Ecology. 100, 4, p. 862-873 12 p.

Research output: Contribution to journalArticle

seed dispersal
seedling
seed
mortality
seeds
3 Citations (Scopus)

The role of integration and abstraction in complex systems thinking across multiple contexts

Neuhauser, C., Sep 27 2012, Earth and Mind II: A Synthesis of Research on Thinking and Learning in the Geosciences. Kastens, K. & Manduca, C. (eds.). p. 121-122 2 p. (Special Paper of the Geological Society of America; vol. 486).

Research output: Chapter in Book/Report/Conference proceedingChapter

systems analysis
geology
education
2011
1 Citation (Scopus)

Competencies: A cure for pre-med curriculum

Anderson, W. A., Amasino, R. M., Ares, M., Banerjee, U., Bartel, B., Corces, V. G., Drennan, C. L., Elgin, S. C. R., Epstein, I. R., Fanning, E., Guillette, L. J., Handelsman, J. O., Hatfull, G. F., Hoy, R. R., Kelley, D., Leinwand, L. A., Losick, R., Lu, Y., Lynn, D. G., Neuhauser, C. & 13 othersO'Dowd, D. K., Olivera, T., Pevzner, P., Richards-Kortum, R. R., Rine, J., Sah, R. L., Strobel, S. A., Walker, G. C., Walt, D. R., Warner, I. M., Wessler, S., Willard, H. F. & Zare, R. N., Nov 11 2011, In : Science. 334, 6057, p. 760-761 2 p.

Research output: Contribution to journalLetter

Curriculum
2 Citations (Scopus)

The p and the peas: An intuitive modeling approach to hypothesis testing

Neuhauser, C. & Stanley, E., Jan 1 2011, In : Mathematical Modelling of Natural Phenomena. 6, 6, p. 76-95 20 p.

Research output: Contribution to journalArticle

Hypothesis Testing
Null hypothesis
Intuitive
Students
Testing
2010

Coevolution in spatial habitats

Neuhauser, C., Dec 1 2010, Proceedings of the International Congress of Mathematicians 2010, ICM 2010. p. 2297-2309 13 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Coevolution
Interaction
Specialization
Model
4 Citations (Scopus)

Stochastic spatial models of host-pathogen and host-mutualist interactions II

Lanchier, N. & Neuhauser, C., Jul 1 2010, In : Stochastic Models. 26, 3, p. 399-430 32 p.

Research output: Contribution to journalArticle

Spatial Model
Pathogens
Stochastic Model
Stochastic models
Interaction
2009
2 Citations (Scopus)

Nanoscale digital computation through percolation

Altun, M., Riedel, M. & Neuhauser, C., Nov 10 2009, 2009 46th ACM/IEEE Design Automation Conference, DAC 2009. p. 615-616 2 p. 5227079

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Margin
Nonlinearity
Percolation Theory
Boolean functions
Interconnect
4 Citations (Scopus)

Spatially explicit non-mendelian diploid model

Lanchier, N. & Neuhauser, C., Oct 1 2009, In : Annals of Applied Probability. 19, 5, p. 1880-1920 41 p.

Research output: Contribution to journalArticle

Spatial Structure
Gene
Vote
Segregation
Genotype
2008
2 Citations (Scopus)

Mathematical Models in Population Genetics

Neuhauser, C., May 9 2008, Handbook of Statistical Genetics: Third Edition. John Wiley & Sons, Ltd, Vol. 2. p. 753-780 28 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Population Genetics
Mathematical Model
Diffusion Approximation
Mutation
Model
67 Citations (Scopus)
bacterial communities
aquatic ecosystem
Ecosystem
Temperature
temperature
2007
76 Citations (Scopus)

Patch aging and the S-Allee effect: Breeding system effects on the demographic response of plants to habitat fragmentation

Wagenius, S., Lonsdorf, E. & Neuhauser, C., Mar 1 2007, In : American Naturalist. 169, 3, p. 383-397 15 p.

Research output: Contribution to journalArticle

Allee effect
habitat fragmentation
reproductive strategy
plant response
pollination
3 Citations (Scopus)

Voter model and biased voter model in heterogeneous environments

Lanchier, N. & Neuhauser, C., Sep 1 2007, In : Journal of Applied Probability. 44, 3, p. 770-787 18 p.

Research output: Contribution to journalArticle

Voter Model
Heterogeneous Environment
Biased
Gene
Pollen
2006
12 Citations (Scopus)

A spatially explicit model for competition among specialists and generalists in a heterogeneous environment

Lanchier, N. & Neuhauser, C., Aug 1 2006, In : Annals of Applied Probability. 16, 3, p. 1385-1410 26 p.

Research output: Contribution to journalArticle

Heterogeneous Environment
Niche
Specialization
Model
Breadth
224 Citations (Scopus)

Local migration promotes competitive restraint in a host-pathogen 'tragedy of the commons'

Kerr, B., Neuhauser, C., Bohannan, B. J. M. & Dean, A. M., Jul 6 2006, In : Nature. 442, 7098, p. 75-78 4 p.

Research output: Contribution to journalArticle

Bacteriophages
Population
Bacteriophage T4
Ecology
Escherichia coli
10 Citations (Scopus)

Stochastic spatial models of host-pathogen and host-mutualist interactions

Lanchier, N. & Neuhauser, C., Feb 1 2006, In : Annals of Applied Probability. 16, 1, p. 448-474 27 p.

Research output: Contribution to journalArticle

Spatial Model
Stochastic Model
Interaction
Specificity
Spatial Structure
2005
15 Citations (Scopus)
natural enemy
natural enemies
insect pests
density dependence
genetically modified organisms
2004
105 Citations (Scopus)

A mutualism-parasitism continuum model and its application to plant-mycorrhizae interactions

Neuhauser, C. & Fargione, J. E., Oct 1 2004, In : Ecological Modelling. 177, 3-4, p. 337-352 16 p.

Research output: Contribution to journalArticle

mutualism
mycorrhiza
parasitism
soil fertility
symbiont
2003
93 Citations (Scopus)

Community genetics: Expanding the synthesis of ecology and genetics

Neuhauser, C., Andow, D., Heimpel, G. E., May, G., Shaw, R. G. & Wagenius, S., Mar 1 2003, In : Ecology. 84, 3, p. 545-558 14 p.

Research output: Contribution to journalReview article

ecology
synthesis
insect
community ecology
interspecific interaction
57 Citations (Scopus)

Effects of parasitoid fecundity and host resistance on indirect interactions among hosts sharing a parasitoid

Heimpel, G. E., Neuhauser, C. & Hoogendoorn, M., Jun 1 2003, In : Ecology letters. 6, 6, p. 556-566 11 p.

Research output: Contribution to journalArticle

parasitoid
fecundity
egg
parasitism
parasitoids
26 Citations (Scopus)

Founder control and coexistence in a simple model of asymmetric competition for light

Perry, L. G., Neuhauser, C. & Galatowitsch, S. M., Jun 21 2003, In : Journal of Theoretical Biology. 222, 4, p. 425-436 12 p.

Research output: Contribution to journalArticle

Coexistence
Light
canopy
Model
light requirement
151 Citations (Scopus)

Spatial dynamics in model plant communities: What do we really know?

Bolker, B. M., Pacala, S. W. & Neuhauser, C., Aug 1 2003, In : American Naturalist. 162, 2, p. 135-148 14 p.

Research output: Contribution to journalArticle

dynamic models
plant community
plant communities
coexistence
fecundity
2002
3 Citations (Scopus)

Effects of Local Interactions and Local Migration on Stability

Neuhauser, C., Jan 1 2002, In : Theoretical Population Biology. 62, 3, p. 297-308 12 p.

Research output: Contribution to journalArticle

fecundity
interspecific competition
mathematical models
demographic statistics
stochasticity
15 Citations (Scopus)

Patterns in spatial simulations - Are they real?

Anderson, K. & Neuhauser, C., Sep 15 2002, In : Ecological Modelling. 155, 1, p. 19-30 12 p.

Research output: Contribution to journalArticle

computer simulation
simulation
40 Citations (Scopus)

The pattern of amino acid replacements in α/β-barrels

Dean, A. M., Neuhauser, C., Grenier, E. & Golding, G. B., Jan 1 2002, In : Molecular Biology and Evolution. 19, 11, p. 1846-1864 19 p.

Research output: Contribution to journalArticle

amino acid
replacement
Amino Acids
amino acids
Enzymes
2000
5 Citations (Scopus)

A spatial model of range-dependent succession

Krone, S. M. & Neuhauser, C., Dec 2000, In : Journal of Applied Probability. 37, 4, p. 1044-1060 17 p.

Research output: Contribution to journalArticle

Spatial Model
Dependent
Saturation
Linearly
Range of data
29 Citations (Scopus)

Biological aging - Criteria for modeling and a new mechanistic model

Pletcher, S. D. & Neuhauser, C., Jan 1 2000, In : International Journal of Modern Physics C. 11, 3, p. 525-546 22 p.

Research output: Contribution to journalArticle

Biological Aging
Aging of materials
Modeling
Reliability theory
molecular biology
1999
101 Citations (Scopus)

An explicitly spatial version of the Lotka-Volterra model with interspecific competition

Neuhauser, C. & Pacala, S. W., Jan 1 1999, In : Annals of Applied Probability. 9, 4, p. 1226-1259 34 p.

Research output: Contribution to journalArticle

Lotka-Volterra Model
Coexistence
Model
Competitive Exclusion
Continuous-time Markov Process
24 Citations (Scopus)

The ancestral graph and gene genealogy under frequency-dependent selection

Neuhauser, C., Jan 1 1999, In : Theoretical Population Biology. 56, 2, p. 203-214 12 p.

Research output: Contribution to journalArticle

genealogy
self incompatibility
haploidy
gene
allele
1998
55 Citations (Scopus)

Habitat destruction and competitive coexistence in spatially explicit models with local interactions

Neuhauser, C., Aug 7 1998, In : Journal of Theoretical Biology. 193, 3, p. 445-463 19 p.

Research output: Contribution to journalArticle

Local Interaction
habitat destruction
Coexistence
Ecosystem
Arrangement
1997
163 Citations (Scopus)

Ancestral processes with selection

Krone, S. M. & Neuhauser, C., Jan 1 1997, In : Theoretical Population Biology. 51, 3, p. 210-237 28 p.

Research output: Contribution to journalArticle

mutation
ancestry
sampling
genealogy
Laplace transform
8 Citations (Scopus)

Coexistence for a catalytic surface reaction model

Bramson, M. & Neuhauser, C., Jan 1 1997, In : Annals of Applied Probability. 7, 3, p. 565-614 50 p.

Research output: Contribution to journalArticle

Coexistence
Polymers
Model
Carbon Monoxide
Platinum
25 Citations (Scopus)

Coexistence results for some competition models

Durrett, R. & Neuhauser, C., Jan 1 1997, In : Annals of Applied Probability. 7, 1, p. 10-45 36 p.

Research output: Contribution to journalArticle

Competition Model
Coexistence
Barley
Virus
Wheat
182 Citations (Scopus)

The genealogy of samples in models with selection

Neuhauser, C. & Krone, S. M., Feb 1 1997, In : Genetics. 145, 2, p. 519-534 16 p.

Research output: Contribution to journalReview article

Genealogy and Heraldry
Alleles
Mutation
Haploidy
Diploidy
1996
6 Citations (Scopus)

A phase transition for the distribution of matching blocks

Neuhauser, C., Jan 1 1996, In : Combinatorics Probability and Computing. 5, 2, p. 139-159 21 p.

Research output: Contribution to journalArticle

Block Matching
Chen-Stein Method
Phase Transition
Phase transitions
Poisson Approximation
5 Citations (Scopus)

Dynamics of a spin-exchange model

Lebowitz, J. L., Neuhauser, C. & Ravishankar, K., Nov 29 1996, In : Stochastic Processes and their Applications. 64, 2, p. 187-208 22 p.

Research output: Contribution to journalArticle

Jump
Model
Stationary States
Decay Rate
Half line
1994
18 Citations (Scopus)

A long range sexual reproduction process

Neuhauser, C., Jan 1 1994, In : Stochastic Processes and their Applications. 53, 2, p. 193-220 28 p.

Research output: Contribution to journalArticle

Wave Speed
Limiting Equations
Range of data
Limiting
Particle System
1992
5 Citations (Scopus)

A catalytic surface reaction model

Bramson, M. D. & Neuhauser, C., Jun 24 1992, In : Journal of Computational and Applied Mathematics. 40, 2, p. 157-161 5 p.

Research output: Contribution to journalArticle

Surface reactions
Polymers
Carbon Monoxide
Carbon monoxide
Oxidation
68 Citations (Scopus)

Ergodic theorems for the multitype contact process

Neuhauser, C., Sep 1 1992, In : Probability Theory and Related Fields. 91, 3-4, p. 467-506 40 p.

Research output: Contribution to journalArticle

Multitype
Contact Process
Ergodic Theorem
Norm
Invariant Measure
1990
7 Citations (Scopus)

An ergodic theorem for Schlögl models with small migration

Neuhauser, C., Mar 1 1990, In : Probability Theory and Related Fields. 85, 1, p. 27-32 6 p.

Research output: Contribution to journalArticle

Birth and Death Process
Ergodic Theorem
Reaction-diffusion
Ergodicity
Diffusion Process