20082019
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Research Output 2008 2019

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2019
2 Citations (Scopus)

Antibiotic-induced Disruption of Intestinal Microbiota Contributes to Failure of Vertical Sleeve Gastrectomy

Jahansouz, C., Staley, C. M., Kizy, S., Xu, H., Hertzel, A. M., Coryell, J., Singroy, S., Hamilton, M. J., DuRand, M., Bernlohr, D. A., Sadowsky, M. J., Khoruts, A. & Ikramuddin, S., Jun 1 2019, In : Annals of surgery. 269, 6, p. 1092-1100 9 p.

Research output: Contribution to journalArticle

Gastrectomy
Anti-Bacterial Agents
Homeostasis
Ceftriaxone
Microbiota
2 Citations (Scopus)

A pilot study of fecal bile acid and microbiota profiles in inflammatory bowel disease and primary sclerosing cholangitis

Vaughn, B. P., Kaiser, T., Staley, C. M., Hamilton, M. J., Reich, J., Graiziger, C., Singroy, S., Kabage, A. J., Sadowsky, M. J. & Khoruts, A., Jan 1 2019, In : Clinical and Experimental Gastroenterology. 12, p. 9-19 11 p.

Research output: Contribution to journalArticle

Open Access
Sclerosing Cholangitis
Microbiota
Bile Acids and Salts
Inflammatory Bowel Diseases
Vancomycin

Cultivar and phosphorus effects on switchgrass yield and rhizosphere microbial diversity

Sawyer, A., Staley, C. M., Lamb, J., Sheaffer, C. C., Kaiser, T., Gutknecht, J. L., Sadowsky, M. J. & Rosen, C. J., Feb 15 2019, In : Applied Microbiology and Biotechnology. 103, 4, p. 1973-1987 15 p.

Research output: Contribution to journalArticle

Panicum
Rhizosphere
Phosphorus
Soil
Biomass

Dysbiosis patterns during re-induction/salvage versus induction chemotherapy for acute leukemia

Rashidi, A., Kaiser, T., Shields-Cutler, R. R., Graiziger, C., Holtan, S. G., Rehman, T. U., Wasko, J., Weisdorf, D. J., Dunny, G. M., Khoruts, A. & Staley, C. M., Dec 1 2019, In : Scientific reports. 9, 1, 6083.

Research output: Contribution to journalArticle

Open Access
Dysbiosis
Induction Chemotherapy
Leukemia
Microbiota
Enterococcus
1 Citation (Scopus)

Impact of long-term grazing exclusion on soil microbial community composition and nutrient availability

Wang, Z., Zhang, Q., Staley, C. M., Gao, H., Ishii, S., Wei, X., Liu, J., Cheng, J., Hao, M. & Sadowsky, M. J., Feb 1 2019, In : Biology and Fertility of Soils. 55, 2, p. 121-134 14 p.

Research output: Contribution to journalArticle

nutrient availability
community composition
microbial communities
microbial community
Soil
Contamination
prediction
Chemical analysis
microbial community
community structure

Influence of short-term changes in dietary sulfur on the relative abundances of intestinal sulfate-reducing bacteria

Dostal Webster, A., Staley, C. M., Hamilton, M. J., Huang, M., Fryxell, K., Erickson, R., Kabage, A. J., Sadowsky, M. J. & Khoruts, A., Jan 1 2019, In : Gut Microbes.

Research output: Contribution to journalArticle

Sulfur
Bilophila
Sulfates
Desulfovibrio
Bacteria
1 Citation (Scopus)

Intermittent flooding of organic-rich soil promotes the formation of denitrification hot moments and hot spots

Tomasek, A. A., Hondzo, M., Kozarek, J., Staley, C. M., Wang, P., Lurndahl, N. & Sadowsky, M. J., Jan 1 2019, In : Ecosphere. 10, 1, e02549.

Research output: Contribution to journalArticle

soil formation
denitrification
organic soil
flooding
connectivity
2 Citations (Scopus)

Signal disruption leads to changes in bacterial community population

Schwab, M., Bergonzi, C., Sakkos, J., Staley, C. M., Zhang, Q., Sadowsky, M. J., Aksan, A. & Elias, M. H., Jan 1 2019, In : Frontiers in Microbiology. 10, MAR, 611.

Research output: Contribution to journalArticle

Open Access
Biofilms
Quorum Sensing
Bioreactors
Acyl-Butyrolactones
Population
2018
8 Citations (Scopus)

Application of SourceTracker for Accurate Identification of Fecal Pollution in Recreational Freshwater: A Double-Blinded Study

Staley, C., Kaiser, T., Lobos, A., Ahmed, W., Harwood, V. J., Brown, C. M. & Sadowsky, M. J., Apr 3 2018, In : Environmental Science and Technology. 52, 7, p. 4207-4217 11 p.

Research output: Contribution to journalArticle

Pollution
pollution
Contamination
Sewage
horse
fermenters
Rumen
Fermentation
rumen
fermentation
1 Citation (Scopus)

Decay of sewage-associated bacterial communities in fresh and marine environmental waters and sediment

Ahmed, W., Staley, C. M., Kaiser, T., Sadowsky, M. J., Kozak, S., Beale, D. & Simpson, S., Aug 1 2018, In : Applied Microbiology and Biotechnology. 102, 16, p. 7159-7170 12 p.

Research output: Contribution to journalArticle

Sewage
Water
Water Quality
Queensland
Fresh Water
Rivers
Land use
river
Sampling
Turbidity
4 Citations (Scopus)

Predicting recurrence of Clostridium difficile infection following encapsulated fecal microbiota transplantation

Staley, C. M., Kaiser, T., Vaughn, B. P., Graiziger, C. T., Hamilton, M. J., Rehman, T. U., Song, K., Khoruts, A. & Sadowsky, M. J., Sep 18 2018, In : Microbiome. 6, 1, 166.

Research output: Contribution to journalArticle

Clostridium Infections
Clostridium difficile
Recurrence
Tissue Donors
Microbiota
12 Citations (Scopus)

Quantitative microbial risk assessment of microbial source tracking markers in recreational water contaminated with fresh untreated and secondary treated sewage

Ahmed, W., Hamilton, K. A., Lobos, A., Hughes, B., Staley, C., Sadowsky, M. J. & Harwood, V. J., Aug 1 2018, In : Environment International. 117, p. 243-249 7 p.

Research output: Contribution to journalArticle

risk assessment
sewage
water
health risk
pathogen
4 Citations (Scopus)

Seasonal metabolic analysis of marine sediments collected from Moreton Bay in South East Queensland, Australia, using a multi-omics-based approach

Beale, D. J., Crosswell, J., Karpe, A. V., Metcalfe, S. S., Morrison, P. D., Staley, C., Ahmed, W., Sadowsky, M. J., Palombo, E. A. & Steven, A. D. L., Aug 1 2018, In : Science of the Total Environment. 631-632, p. 1328-1341 14 p.

Research output: Contribution to journalArticle

marine sediment
Sediments
wet season
Nutrients
community composition
30 Citations (Scopus)

Strain Tracking Reveals the Determinants of Bacterial Engraftment in the Human Gut Following Fecal Microbiota Transplantation

Smillie, C. S., Sauk, J., Gevers, D., Friedman, J., Sung, J., Youngster, I., Hohmann, E. L., Staley, C. M., Khoruts, A., Sadowsky, M. J., Allegretti, J. R., Smith, M. B., Xavier, R. J. & Alm, E. J., Feb 14 2018, In : Cell Host and Microbe. 23, 2, p. 229-240.e5

Research output: Contribution to journalArticle

Clostridium difficile
Microbiota
Tissue Donors
Bacteria
Clostridium Infections
3 Citations (Scopus)
genes
Nitrates
fluvial deposit
nitrates
Sediments
4 Citations (Scopus)
Urea
Soil
Nitrification
Nitrosomonadaceae
Xanthomonadaceae
2017
9 Citations (Scopus)

A community multi-omics approach towards the assessment of surface water quality in an urban river system

Beale, D. J., Karpe, A. V., Ahmed, W., Cook, S., Morrison, P. D., Staley, C., Sadowsky, M. J. & Palombo, E. A., Mar 14 2017, In : International journal of environmental research and public health. 14, 3, 303.

Research output: Contribution to journalArticle

Open Access
Water Quality
Rivers
Ecosystem
Mass Spectrometry
Actinomycetales
14 Citations (Scopus)
Estuaries
Lakes
Bacteria
Animals
Throughput
9 Citations (Scopus)

Amplicon-based profiling of bacteria in raw and secondary treated wastewater from treatment plants across Australia

Ahmed, W., Staley, C. M., Sidhu, J., Sadowsky, M. J. & Toze, S., Feb 1 2017, In : Applied Microbiology and Biotechnology. 101, 3, p. 1253-1266 14 p.

Research output: Contribution to journalArticle

Waste Water
Bacteria
Arcobacter
Genes
Pseudomonas
13 Citations (Scopus)

Amplicon-based taxonomic characterization of bacteria in urban and peri-urban roof-harvested rainwater stored in tanks

Ahmed, W., Staley, C., Hamilton, K. A., Beale, D. J., Sadowsky, M. J., Toze, S. & Haas, C. N., Jan 15 2017, In : Science of the Total Environment. 576, p. 326-334 9 p.

Research output: Contribution to journalArticle

Water tanks
rainwater
Roofs
roof
Bacteria
6 Citations (Scopus)

A multi-omics based ecological analysis of coastal marine sediments from Gladstone, in Australia's Central Queensland, and Heron Island, a nearby fringing platform reef

Beale, D. J., Crosswell, J., Karpe, A. V., Ahmed, W., Williams, M., Morrison, P. D., Metcalfe, S., Staley, C., Sadowsky, M. J., Palombo, E. A. & Steven, A. D. L., Dec 31 2017, In : Science of the Total Environment. 609, p. 842-853 12 p.

Research output: Contribution to journalArticle

Reefs
sterol
coastal sediment
Sterols
Polycyclic aromatic hydrocarbons
7 Citations (Scopus)

Analysis of gut microbiota–An ever changing landscape

Sadowsky, M. J., Staley, C., Heiner, C., Hall, R., Kelly, C. R., Brandt, L. & Khoruts, A., May 4 2017, In : Gut Microbes. 8, 3, p. 268-275 8 p.

Research output: Contribution to journalArticle

Technology
Clostridium Infections
Clostridium difficile
Microbiota
Metagenomics
8 Citations (Scopus)

Community dynamics drive punctuated engraftment of the fecal microbiome following transplantation using freeze-dried, encapsulated fecal microbiota

Staley, C. M., Vaughn, B. P., Graiziger, C. T., Singroy, S., Hamilton, M. J., Yao, D., Chen, C., Khoruts, A. & Sadowsky, M. J., May 4 2017, In : Gut Microbes. 8, 3, p. 276-288 13 p.

Research output: Contribution to journalArticle

Microbiota
Clostridium Infections
Clostridium difficile
Transplantation
Tissue Donors
11 Citations (Scopus)

Differential impacts of land-based sources of pollution on the microbiota of southeast Florida coral reefs

Staley, C. M., Kaiser, T., Gidley, M. L., Enochs, I. C., Jones, P. R., Goodwin, K. D., Sinigalliano, C. D., Sadowsky, M. J. & Chun, C., May 1 2017, In : Applied and Environmental Microbiology. 83, 10, p. AEM.03378-16 e03378-16.

Research output: Contribution to journalArticle

Coral Reefs
Microbiota
coral reefs
coral reef
microbial community
2 Citations (Scopus)

Diurnal cycling of rhizosphere bacterial communities is associated with shifts in carbon metabolism

Staley, C. M., Ferrieri, A. P., Tfaily, M. M., Cui, Y., Chu, R. K., Wang, P., Shaw, J. B., Ansong, C. K., Brewer, H., Norbeck, A. D., Markillie, M., do Amaral, F., Tuleski, T., Pellizzaro, T., Agtuca, B., Ferrieri, R., Tringe, S. G., Paša-Tolić, L., Stacey, G. & Sadowsky, M. J., Jun 24 2017, In : Microbiome. 5, 1, 1 p.

Research output: Contribution to journalArticle

Rhizosphere
Carbon
Circadian Clocks
Photoperiod
Brachypodium
7 Citations (Scopus)

Environmental drivers of denitrification rates and denitrifying gene abundances in channels and riparian areas

Tomasek, A., Kozarek, J., Hondzo, M., Lurndahl, N., Sadowsky, M. J., Wang, P. & Staley, C. M., Aug 1 2017, In : Water Resources Research. 53, 8, p. 6523-6538 16 p.

Research output: Contribution to journalArticle

denitrification
gene
intensive agriculture
climatic region
rate
2 Citations (Scopus)
Clostridium Infections
Clostridium difficile
Urinary Tract Infections
Gentamicins
Aminoglycosides
5 Citations (Scopus)
Denitrification
Hyphomicrobiaceae
Burkholderiaceae
Cytophagaceae
Nitrates
1 Citation (Scopus)

Influence of heavy metals on rhizosphere microbial communities of Siam weed (Chromolaena odorata (L.)) using a 16S rRNA gene amplicon sequencing approach

Ruangdech, T., Wongphatcharachai, M., Staley, C. M., Sadowsky, M. J. & Sajjaphan, K., Jun 1 2017, In : Agriculture and Natural Resources. 51, 3, p. 137-141 5 p.

Research output: Contribution to journalArticle

Chromolaena
Chromolaena odorata
Rhizosphere
Thailand
Heavy Metals

Next-generation sequencing and culture-based techniques offer complementary insights into fungi and prokaryotes in beach sands

Romão, D., Staley, C., Ferreira, F., Rodrigues, R., Sabino, R., Veríssimo, C., Wang, P., Sadowsky, M. & Brandão, J., Jun 15 2017, In : Marine Pollution Bulletin. 119, 1, p. 351-358 8 p.

Research output: Contribution to journalArticle

prokaryote
Beaches
prokaryotic cells
Fungi
beaches
6 Citations (Scopus)

Sleeve gastrectomy drives persistent shifts in the gut microbiome

Jahansouz, C., Staley, C. M., Bernlohr, D. A., Sadowsky, M. J., Khoruts, A. & Ikramuddin, S., Jun 1 2017, In : Surgery for Obesity and Related Diseases. 13, 6, p. 916-924 9 p.

Research output: Contribution to journalArticle

Gastrectomy
Gastrointestinal Microbiome
Weights and Measures
Obese Mice
Bariatric Surgery
19 Citations (Scopus)

Stable engraftment of human microbiota into mice with a single oral gavage following antibiotic conditioning

Staley, C. M., Kaiser, T., Beura, L. K., Hamilton, M. J., Weingarden, A. R., Bobr, A., Kang, J., Masopust, D., Sadowsky, M. J. & Khoruts, A., Aug 1 2017, In : Microbiome. 5, 1, 1 p.

Research output: Contribution to journalArticle

Microbiota
Anti-Bacterial Agents
Disease Attributes
Clinical Protocols
Masks
37 Citations (Scopus)
Clostridium Infections
Clostridium difficile
Microbiota
Cohort Studies
Capsules
10 Citations (Scopus)

Synthesis and Biological Evaluation of Bile Acid Analogues Inhibitory to Clostridium difficile Spore Germination

Stoltz, K. L., Erickson, R., Staley, C. M., Weingarden, A. R., Romens, E., Steer, C. J., Khoruts, A., Sadowsky, M. J. & Dosa, P. I., Apr 27 2017, In : Journal of Medicinal Chemistry. 60, 8, p. 3451-3471 21 p.

Research output: Contribution to journalArticle

Clostridium difficile
Germination
Spores
Bile Acids and Salts
Clostridium Infections
2 Citations (Scopus)
intestinal microorganisms
microbial communities
microbial community
diet
digestive system
6 Citations (Scopus)

Virulence and biodegradation potential of dynamic microbial communities associated with decaying Cladophora in Great Lakes

Chun, C. L., Peller, J. R., Shively, D., Byappanahalli, M. N., Whitman, R. L., Staley, C., Zhang, Q., Ishii, S. & Sadowsky, M. J., Jan 1 2017, In : Science of the Total Environment. 574, p. 872-880 9 p.

Research output: Contribution to journalArticle

virulence
Biodegradation
Lakes
microbial community
biodegradation
2016
11 Citations (Scopus)
microbial communities
microbial community
surface water
matrix
public health
18 Citations (Scopus)
cover crop
Fertilizers
soil cover
nutrient cycling
Farms
25 Citations (Scopus)

Beach sand and the potential for infectious disease transmission: Observations and recommendations

Solo-Gabriele, H. M., Harwood, V. J., Kay, D., Fujioka, R. S., Sadowsky, M. J., Whitman, R. L., Wither, A., Caniça, M., Carvalho da Fonseca, R., Duarte, A., Edge, T. A., Gargaté, M. J., Gunde-Cimerman, N., Hagen, F., McLellan, S. L., Nogueira da Silva, A., Novak Babič, M., Prada, S., Rodrigues, R., Romão, D. & 9 othersSabino, R., Samson, R. A., Segal, E., Staley, C., Taylor, H. D., Veríssimo, C., Viegas, C., Barroso, H. & Brandão, J. C., Jan 1 2016, In : Journal of the Marine Biological Association of the United Kingdom. 96, 1, p. 101-120 20 p.

Research output: Contribution to journalArticle

disease transmission
infectious disease
infectious diseases
beaches
beach
29 Citations (Scopus)
Clostridium Infections
Clostridium difficile
Microbiota
Tissue Donors
Bacteria
10 Citations (Scopus)

Correlations between pathogen concentration and fecal indicator marker genes in beach environments

Zhang, Q., Eichmiller, J. J., Staley, C. M., Sadowsky, M. J. & Ishii, S., Dec 15 2016, In : Science of the Total Environment. 573, p. 826-830 5 p.

Research output: Contribution to journalArticle

Pathogens
Beaches
beach
pathogen
Genes
1 Citation (Scopus)

Draft genome sequences of four novel thermal- and alkaline-tolerant Egyptian Rhizobium strains nodulating berseem clover

Shamseldin, A., Nelson, M., Staley, C. M., Guhlin, J. & Sadowsky, M. J., Jan 1 2016, In : Genome Announcements. 4, 5, e00988-16.

Research output: Contribution to journalArticle

Medicago
Rhizobium
United States Department of Agriculture
Hot Temperature
Genome
161 Citations (Scopus)

Effect of fecal microbiota transplantation on recurrence in multiply recurrent clostridium difficile infection a randomized trial

Kelly, C. R., Khoruts, A., Staley, C., Sadowsky, M. J., Abd, M., Alani, M., Bakow, B., Curran, P., McKenney, J., Tisch, A., Reinert, S. E., MacHan, J. T. & Brandt, L. J., Nov 1 2016, In : Annals of internal medicine. 165, 9, p. 609-616 8 p.

Research output: Contribution to journalArticle

Clostridium Infections
Clostridium difficile
Recurrence
Tissue Donors
Colonoscopy
23 Citations (Scopus)

Environment shapes the fecal microbiome of invasive carp species

Eichmiller, J. J., Hamilton, M. J., Staley, C. M., Sadowsky, M. J. & Sorensen, P. W., Jan 1 2016, In : Microbiome. 4, 44.

Research output: Contribution to journalArticle

Introduced Species
Carps
Microbiota
Fishes
Fusobacteria
10 Citations (Scopus)
Fresh Water
bacterial communities
beaches
Bacterial Structures
Northern Hemisphere
8 Citations (Scopus)

Sediments and Soils Act as Reservoirs for Taxonomic and Functional Bacterial Diversity in the Upper Mississippi River

Staley, C., Gould, T. J., Wang, P., Phillips, J., Cotner, J. B. & Sadowsky, M. J., May 1 2016, In : Microbial ecology. 71, 4, p. 814-824 11 p.

Research output: Contribution to journalArticle

Mississippi River
sediments
bacterial communities
river
sediment
18 Citations (Scopus)
Bacterial Structures
Fertilizers
Soil
Rhizosphere
Nitrosomonadaceae