Christopher M Staley

Accepting PhD Students

20082024

Research output per year

If you made any changes in Pure these will be visible here soon.

Research Output

2020

Gut dysbiosis during antileukemia chemotherapy versus allogeneic hematopoietic cell transplantation

Rashidi, A., Kaiser, T., Graiziger, C., Holtan, S. G., Rehman, T. U., Weisdorf, D. J., Dunny, G. M., Khoruts, A. & Staley, C., Apr 1 2020, In : Cancer. 126, 7, p. 1434-1447 14 p.

Research output: Contribution to journalArticle

2 Scopus citations

Levaquin Gets a Pass

Rashidi, A., Kaiser, T., Holtan, S. G., Rehman, T. U., Weisdorf, D. J., Khoruts, A. & Staley, C., Jan 1 2020, (Accepted/In press) In : Biology of Blood and Marrow Transplantation.

Research output: Contribution to journalArticle

Microbiome swings with repeated insults

Rashidi, A., Maeser, D., Kaiser, T., Ebadi, M., Rehman, T. U., Holtan, S. G., Weisdorf, D. J., Khoruts, A. & Staley, C., Jan 1 2020, (Accepted/In press) In : British journal of haematology.

Research output: Contribution to journalLetter

Open Access

Specific gut microbiota changes heralding bloodstream infection and neutropenic fever during intensive chemotherapy

Rashidi, A., Kaiser, T., Graiziger, C., Holtan, S. G., Rehman, T. U., Weisdorf, D. J., Khoruts, A. & Staley, C., Jan 1 2020, In : Leukemia. 34, 1, p. 312-316 5 p.

Research output: Contribution to journalLetter

2 Scopus citations
2019

Antibiotic-induced Disruption of Intestinal Microbiota Contributes to Failure of Vertical Sleeve Gastrectomy

Jahansouz, C., Staley, C., Kizy, S., Xu, H., Hertzel, A. V., Coryell, J., Singroy, S., Hamilton, M., DuRand, M., Bernlohr, D. A., Sadowsky, M. J., Khoruts, A. & Ikramuddin, S., Jun 1 2019, In : Annals of surgery. 269, 6, p. 1092-1100 9 p.

Research output: Contribution to journalArticle

3 Scopus citations

A pilot study of fecal bile acid and microbiota profiles in inflammatory bowel disease and primary sclerosing cholangitis

Vaughn, B. P., Kaiser, T., Staley, C. M., Hamilton, M. J., Reich, J., Graiziger, C., Singroy, S., Kabage, A. J., Sadowsky, M. J. & Khoruts, A., Jan 1 2019, In : Clinical and Experimental Gastroenterology. 12, p. 9-19 11 p.

Research output: Contribution to journalArticle

Open Access
6 Scopus citations

Compositional and temporal stability of fecal taxon libraries for use with SourceTracker in sub-tropical catchments

O'Dea, C., Zhang, Q., Staley, C., Masters, N., Kuballa, A., Fisher, P., Veal, C., Stratton, H., Sadowsky, M. J., Ahmed, W. & Katouli, M., Nov 15 2019, In : Water Research. 165, 114967.

Research output: Contribution to journalArticle

Cultivar and phosphorus effects on switchgrass yield and rhizosphere microbial diversity

Sawyer, A., Staley, C., Lamb, J., Sheaffer, C., Kaiser, T., Gutknecht, J., Sadowsky, M. J. & Rosen, C., Feb 15 2019, In : Applied Microbiology and Biotechnology. 103, 4, p. 1973-1987 15 p.

Research output: Contribution to journalArticle

1 Scopus citations

Durable long-term bacterial engraftment following encapsulated fecal microbiota transplantation to treat clostridium difficile infection

Staley, C., Kaiser, T., Vaughn, B. P., Graiziger, C., Hamilton, M. J., Kabage, A. J., Khoruts, A. & Sadowsky, M. J., Jul 1 2019, In : mBio. 10, 4, e01586-19.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations

Dysbiosis patterns during re-induction/salvage versus induction chemotherapy for acute leukemia

Rashidi, A., Kaiser, T., Shields-Cutler, R. R., Graiziger, C., Holtan, S. G., Rehman, T. U., Wasko, J., Weisdorf, D. J., Dunny, G. M., Khoruts, A. & Staley, C. M., Dec 1 2019, In : Scientific reports. 9, 1, 6083.

Research output: Contribution to journalArticle

Open Access
4 Scopus citations

Impact of long-term grazing exclusion on soil microbial community composition and nutrient availability

Wang, Z., Zhang, Q., Staley, C., Gao, H., Ishii, S., Wei, X., Liu, J., Cheng, J., Hao, M. & Sadowsky, M. J., Feb 1 2019, In : Biology and Fertility of Soils. 55, 2, p. 121-134 14 p.

Research output: Contribution to journalArticle

6 Scopus citations

Impacts of a changing earth on microbial dynamics and human health risks in the continuum between beach water and sand

Weiskerger, C. J., Brandão, J., Ahmed, W., Aslan, A., Avolio, L., Badgley, B. D., Boehm, A. B., Edge, T. A., Fleisher, J. M., Heaney, C. D., Jordao, L., Kinzelman, J. L., Klaus, J. S., Kleinheinz, G. T., Meriläinen, P., Nshimyimana, J. P., Phanikumar, M. S., Piggot, A. M., Pitkänen, T., Robinson, C. & 9 others, Sadowsky, M. J., Staley, C., Staley, Z. R., Symonds, E. M., Vogel, L. J., Yamahara, K. M., Whitman, R. L., Solo-Gabriele, H. M. & Harwood, V. J., Oct 1 2019, In : Water Research. 162, p. 456-470 15 p.

Research output: Contribution to journalReview article

2 Scopus citations

Influence of Library Composition on SourceTracker Predictions for Community-Based Microbial Source Tracking

Brown, C. M., Mathai, P. P., Loesekann, T., Staley, C. & Sadowsky, M. J., Jan 2 2019, In : Environmental Science and Technology. 53, 1, p. 60-68 9 p.

Research output: Contribution to journalArticle

3 Scopus citations

Influence of short-term changes in dietary sulfur on the relative abundances of intestinal sulfate-reducing bacteria

Dostal Webster, A., Staley, C. M., Hamilton, M. J., Huang, M., Fryxell, K., Erickson, R., Kabage, A. J., Sadowsky, M. J. & Khoruts, A., Jul 4 2019, In : Gut microbes. 10, 4, p. 447-457 11 p.

Research output: Contribution to journalArticle

2 Scopus citations

Intermittent flooding of organic-rich soil promotes the formation of denitrification hot moments and hot spots

Tomasek, A. A., Hondzo, M., Kozarek, J. L., Staley, C., Wang, P., Lurndahl, N. & Sadowsky, M. J., Jan 2019, In : Ecosphere. 10, 1, e02549.

Research output: Contribution to journalArticle

Open Access
3 Scopus citations

Microbial Exposure Enhances Immunity to Pathogens Recognized by TLR2 but Increases Susceptibility to Cytokine Storm through TLR4 Sensitization

Huggins, M. A., Sjaastad, F. V., Pierson, M., Kucaba, T. A., Swanson, W., Staley, C., Weingarden, A. R., Jensen, I. J., Danahy, D. B., Badovinac, V. P., Jameson, S. C., Vezys, V., Masopust, D., Khoruts, A., Griffith, T. S. & Hamilton, S. E., Aug 13 2019, In : Cell reports. 28, 7, p. 1729-1743.e5

Research output: Contribution to journalArticle

Open Access
2 Scopus citations
2 Scopus citations

Signal disruption leads to changes in bacterial community population

Schwab, M., Bergonzi, C., Sakkos, J., Staley, C., Zhang, Q., Sadowsky, M. J., Aksan, A. & Elias, M., Jan 1 2019, In : Frontiers in Microbiology. 10, MAR, 611.

Research output: Contribution to journalArticle

Open Access
4 Scopus citations

Vancomycin-resistance gene cluster, vanC, in the gut microbiome of acute leukemia patients undergoing intensive chemotherapy

Rashidi, A., Zhu, Z., Kaiser, T., Manias, D. A., Holtan, S. G., Rehman, T. U., Weisdorf, D. J., Khoruts, A., Dunny, G. M. & Staley, C., Jan 1 2019, In : PloS one. 14, 10, e0223890.

Research output: Contribution to journalArticle

Open Access
2 Scopus citations
2018

Application of SourceTracker for Accurate Identification of Fecal Pollution in Recreational Freshwater: A Double-Blinded Study

Staley, C., Kaiser, T., Lobos, A., Ahmed, W., Harwood, V. J., Brown, C. M. & Sadowsky, M. J., Apr 3 2018, In : Environmental Science and Technology. 52, 7, p. 4207-4217 11 p.

Research output: Contribution to journalArticle

14 Scopus citations

Clinician Guide to Microbiome Testing

Staley, C., Kaiser, T. & Khoruts, A., Dec 1 2018, In : Digestive Diseases and Sciences. 63, 12, p. 3167-3177 11 p.

Research output: Contribution to journalReview article

4 Scopus citations
Open Access

Decay of sewage-associated bacterial communities in fresh and marine environmental waters and sediment

Ahmed, W., Staley, C., Kaiser, T., Sadowsky, M. J., Kozak, S., Beale, D. & Simpson, S., Aug 1 2018, In : Applied Microbiology and Biotechnology. 102, 16, p. 7159-7170 12 p.

Research output: Contribution to journalArticle

3 Scopus citations

Fecal pollution: new trends and challenges in microbial source tracking using next-generation sequencing

Unno, T., Staley, C., Brown, C. M., Han, D., Sadowsky, M. J. & Hur, H. G., Sep 2018, In : Environmental microbiology. 20, 9, p. 3132-3140 9 p.

Research output: Contribution to journalReview article

4 Scopus citations
1 Scopus citations
1 Scopus citations

Predicting recurrence of Clostridium difficile infection following encapsulated fecal microbiota transplantation

Staley, C. M., Kaiser, T., Vaughn, B. P., Graiziger, C. T., Hamilton, M. J., Rehman, T. U., Song, K., Khoruts, A. & Sadowsky, M. J., Sep 18 2018, In : Microbiome. 6, 1, 166.

Research output: Contribution to journalArticle

Open Access
11 Scopus citations

Quantitative microbial risk assessment of microbial source tracking markers in recreational water contaminated with fresh untreated and secondary treated sewage

Ahmed, W., Hamilton, K. A., Lobos, A., Hughes, B., Staley, C., Sadowsky, M. J. & Harwood, V. J., Aug 2018, In : Environment International. 117, p. 243-249 7 p.

Research output: Contribution to journalArticle

24 Scopus citations

Seasonal metabolic analysis of marine sediments collected from Moreton Bay in South East Queensland, Australia, using a multi-omics-based approach

Beale, D. J., Crosswell, J., Karpe, A. V., Metcalfe, S. S., Morrison, P. D., Staley, C., Ahmed, W., Sadowsky, M. J., Palombo, E. A. & Steven, A. D. L., Aug 1 2018, In : Science of the Total Environment. 631-632, p. 1328-1341 14 p.

Research output: Contribution to journalArticle

8 Scopus citations

Strain Tracking Reveals the Determinants of Bacterial Engraftment in the Human Gut Following Fecal Microbiota Transplantation

Smillie, C. S., Sauk, J., Gevers, D., Friedman, J., Sung, J., Youngster, I., Hohmann, E. L., Staley, C., Khoruts, A., Sadowsky, M. J., Allegretti, J. R., Smith, M. B., Xavier, R. J. & Alm, E. J., Feb 14 2018, In : Cell Host and Microbe. 23, 2, p. 229-240.e5

Research output: Contribution to journalArticle

Open Access
60 Scopus citations
5 Scopus citations
Open Access
5 Scopus citations
2017

A community multi-omics approach towards the assessment of surface water quality in an urban river system

Beale, D. J., Karpe, A. V., Ahmed, W., Cook, S., Morrison, P. D., Staley, C., Sadowsky, M. J. & Palombo, E. A., Mar 14 2017, In : International journal of environmental research and public health. 14, 3, 303.

Research output: Contribution to journalArticle

Open Access
14 Scopus citations
19 Scopus citations

Amplicon-based profiling of bacteria in raw and secondary treated wastewater from treatment plants across Australia

Ahmed, W., Staley, C., Sidhu, J., Sadowsky, M. & Toze, S., Feb 1 2017, In : Applied Microbiology and Biotechnology. 101, 3, p. 1253-1266 14 p.

Research output: Contribution to journalArticle

18 Scopus citations

Amplicon-based taxonomic characterization of bacteria in urban and peri-urban roof-harvested rainwater stored in tanks

Ahmed, W., Staley, C., Hamilton, K. A., Beale, D. J., Sadowsky, M. J., Toze, S. & Haas, C. N., Jan 15 2017, In : Science of the Total Environment. 576, p. 326-334 9 p.

Research output: Contribution to journalArticle

13 Scopus citations

A multi-omics based ecological analysis of coastal marine sediments from Gladstone, in Australia's Central Queensland, and Heron Island, a nearby fringing platform reef

Beale, D. J., Crosswell, J., Karpe, A. V., Ahmed, W., Williams, M., Morrison, P. D., Metcalfe, S., Staley, C., Sadowsky, M. J., Palombo, E. A. & Steven, A. D. L., Dec 31 2017, In : Science of the Total Environment. 609, p. 842-853 12 p.

Research output: Contribution to journalArticle

8 Scopus citations

Analysis of gut microbiota–An ever changing landscape

Sadowsky, M. J., Staley, C., Heiner, C., Hall, R., Kelly, C. R., Brandt, L. & Khoruts, A., May 4 2017, In : Gut microbes. 8, 3, p. 268-275 8 p.

Research output: Contribution to journalArticle

Open Access
9 Scopus citations

Community dynamics drive punctuated engraftment of the fecal microbiome following transplantation using freeze-dried, encapsulated fecal microbiota

Staley, C., Vaughn, B. P., Graiziger, C. T., Singroy, S., Hamilton, M. J., Yao, D., Chen, C., Khoruts, A. & Sadowsky, M. J., May 4 2017, In : Gut microbes. 8, 3, p. 276-288 13 p.

Research output: Contribution to journalArticle

Open Access
11 Scopus citations
9 Scopus citations

Differential impacts of land-based sources of pollution on the microbiota of southeast Florida coral reefs

Staley, C. M., Kaiser, T., Gidley, M. L., Enochs, I. C., Jones, P. R., Goodwin, K. D., Sinigalliano, C. D., Sadowsky, M. J. & Chun, C., May 1 2017, In : Applied and Environmental Microbiology. 83, 10, p. AEM.03378-16 e03378-16.

Research output: Contribution to journalArticle

Open Access
17 Scopus citations

Diurnal cycling of rhizosphere bacterial communities is associated with shifts in carbon metabolism

Staley, C., Ferrieri, A. P., Tfaily, M. M., Cui, Y., Chu, R. K., Wang, P., Shaw, J. B., Ansong, C. K., Brewer, H., Norbeck, A. D., Markillie, M., do Amaral, F., Tuleski, T., Pellizzaro, T., Agtuca, B., Ferrieri, R., Tringe, S. G., Paša-Tolić, L., Stacey, G. & Sadowsky, M. J., Jun 24 2017, In : Microbiome. 5, 1, 1 p.

Research output: Contribution to journalArticle

Open Access
4 Scopus citations

Environmental drivers of denitrification rates and denitrifying gene abundances in channels and riparian areas

Tomasek, A., Kozarek, J. L., Hondzo, M., Lurndahl, N., Sadowsky, M. J., Wang, P. & Staley, C., Aug 2017, In : Water Resources Research. 53, 8, p. 6523-6538 16 p.

Research output: Contribution to journalArticle

9 Scopus citations
Open Access
2 Scopus citations
Open Access
5 Scopus citations

Influence of heavy metals on rhizosphere microbial communities of Siam weed (Chromolaena odorata (L.)) using a 16S rRNA gene amplicon sequencing approach

Ruangdech, T., Wongphatcharachai, M., Staley, C. M., Sadowsky, M. J. & Sajjaphan, K., Jun 2017, In : Agriculture and Natural Resources. 51, 3, p. 137-141 5 p.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations

Interaction of gut microbiota with bile acid metabolism and its influence on disease states

Staley, C., Weingarden, A. R., Khoruts, A. & Sadowsky, M. J., Jan 1 2017, In : Applied Microbiology and Biotechnology. 101, 1, p. 47-64 18 p.

Research output: Contribution to journalReview article

Open Access
76 Scopus citations

Next-generation sequencing and culture-based techniques offer complementary insights into fungi and prokaryotes in beach sands

Romão, D., Staley, C., Ferreira, F., Rodrigues, R., Sabino, R., Veríssimo, C., Wang, P., Sadowsky, M. & Brandão, J., Jun 15 2017, In : Marine Pollution Bulletin. 119, 1, p. 351-358 8 p.

Research output: Contribution to journalArticle

3 Scopus citations

Peculiar citric acid cycle of hydrothermal vent chemolithoautotroph Hydrogenovibrio crunogenus, and insights into carbon metabolism by obligate autotrophs

Quasem, I., Achille, A. N., Caddick, B. A., Carter, T. A., Daniels, C., Delaney, J. A., Delic, V., Denton, K. A., Duran, M. C., Fatica, M. K., Ference, C. M., Galkiewicz, J. P., Garcia, A. M., Hendrick, J. D., Horton, S. A., Kun, M. S., Koch, P. W., Lee, T. M., McCabe, C. R., McHale, S. & 20 others, McDaniel, L. D., Menning, D. M., Menning, K. J., Mirzaei-Souderjani, H., Mostajabian, S., Nicholson, D. A., Nugent, C. K., Osman, N. P., Pappas, D. I., Rocha, A. M., Rosario, K., Rubelmann, H., Schwartz, J. A., Seeley, K. W., Staley, C. M., Wallace, E. M., Wong, T. M., Zielinski, B. L., Hanson, T. E. & Scott, K. M., Jul 1 2017, In : FEMS Microbiology Letters. 364, 14, fnx148.

Research output: Contribution to journalLetter

3 Scopus citations