If you made any changes in Pure, your changes will be visible here soon.

Research Output 1991 2019

1991

The phylogenetic relationships of the Crystal Darter, Crystallaria asprella

Simons, A. M., 1991, In : Copeia. p. 927-936

Research output: Contribution to journalArticle

1992

The phylogenetic relationships of the Boleosoma species group

Simons, A. M., 1992, Systematics, Historical Ecology, and North American Freshwater Fishes. Mayden, R. L. (ed.). Stanford, CA: Stanford University Press, p. 268-292

Research output: Chapter in Book/Report/Conference proceedingChapter

1997
15 Citations (Scopus)

Identification of a fish host of the inflated heelsplitter Potamilus inflatus (Bivalvia: Unionidae) with a description of its glochidium

Roe, K. J., Simons, A. M. & Hartfield, P., Jul 1997, In : American Midland Naturalist. 138, 1, p. 48-54 7 p.

Research output: Contribution to journalArticle

Unionidae
Bivalvia
Aplodinotus grunniens
fish
mussels
36 Citations (Scopus)
Semotilus atromaculatus
cyprinid
Cyprinidae
Actinopterygii
spine (bones)
1998
56 Citations (Scopus)
Semotilus atromaculatus
16S Ribosomal RNA
Cyprinidae
parsimony analysis
Eurasia
1999
35 Citations (Scopus)

Phylogenetic relationships of North American cyprinids and assessment of homology of the open posterior myodome

Simons, A. M. & Mayden, R. L., Feb 5 1999, In : Copeia. 1, p. 13-21 9 p.

Research output: Contribution to journalArticle

cyprinid
homology
phylogenetics
nucleotide sequences
phylogeny
2000
6 Citations (Scopus)

Assessment of monophyly of the minnow genus Pteronotropis (Teleostei: Cyprinidae)

Simons, A. M., Knott, K. E. & Mayden, R. L., Dec 22 2000, In : Copeia. 4, p. 1068-1075 8 p.

Research output: Contribution to journalArticle

minnows
Cyprinidae
monophyly
cytochrome b
phylogeny
2001
25 Citations (Scopus)

Phylogenetics of Scaphirhynchus based on mitochondrial DNA sequences

Simons, A. M., Wood, R. M., Heath, L. S., Kuhajda, B. R. & Mayden, R. L., Jan 1 2001, In : Transactions of the American Fisheries Society. 130, 3, p. 359-366 8 p.

Research output: Contribution to journalArticle

Scaphirhynchus
mitochondrial DNA
Acipenser medirostris
Acipenser transmontanus
phylogenetics
2002
11 Citations (Scopus)
Cyprinidae
spawning
Dionda
Cyprinella
phylogenetics
2003
53 Citations (Scopus)
molecular systematics
Cyprinidae
Actinopterygii
RNA
Semotilus atromaculatus
76 Citations (Scopus)

Phylogeography of the northern hogsucker, Hypentelium nigricans (Teleostei: Cypriniformes): Genetic evidence for the existence of the ancient Teays River

Berendzen, P. B., Simons, A. M. & Wood, R. M., Aug 1 2003, In : Journal of Biogeography. 30, 8, p. 1139-1152 14 p.

Research output: Contribution to journalArticle

Cypriniformes
phylogeography
rivers
Mississippi River
river
2004
18 Citations (Scopus)

Comparison of harvested and nonharvested painted turtle populations

Gamble, T. & Simons, A. M., Dec 1 2004, In : Wildlife Society Bulletin. 32, 4, p. 1269-1277 9 p.

Research output: Contribution to journalArticle

turtle
turtles
lakes
lake
Chrysemys picta
6 Citations (Scopus)

Morphology and Phylogeny of the Studfish Clade, Subgenus Xenisma (Teleostei: Cyprinodontiformes)

Ghedotti, M. J., Simons, A. M. & Davis, M. P., Feb 9 2004, In : Copeia. 1, p. 53-61 9 p.

Research output: Contribution to journalArticle

osteology
Fundulus
Cyprinodontiformes
parsimony analysis
allozyme
16 Citations (Scopus)

Phylogenetic relationships in the genus Erimystax (Actinopterygii: Cyprinidae) based on the cytochrome b gene

Simons, A. M., Jan 1 2004, In : Copeia. 2, p. 351-356 6 p.

Research output: Contribution to journalArticle

Cyprinidae
Actinopterygii
refugium
refuge habitats
cytochrome b
2006

Molecular Systematics and classification of North American Notropin shiners and minnows (Cypriniformes: Cyprinidae)

Mayden, R. L., Simons, A. M., Wood, R. M., Harris, P. M. & Kuhajda, B. R., 2006, Studies of North American Desert Fishes in Honor of E. P. (Phil) Pister, Conservationist. Lozano-Vilano, M. D. L. & Contreras-Balderas, A. J. (eds.). Universidad Autonoma de Nuevo Leon, Mexico, p. 72-101

Research output: Chapter in Book/Report/Conference proceedingChapter

39 Citations (Scopus)

Phylogeography and post-glacial colonization patterns of the rainbow darter, Etheostoma caeruleum (Teleostei: Percidae)

Ray, J. M., Wood, R. M. & Simons, A. M., Sep 1 2006, In : Journal of Biogeography. 33, 9, p. 1550-1558 9 p.

Research output: Contribution to journalArticle

Percidae
Etheostoma
Mississippi River
phylogeography
Postglacial
41 Citations (Scopus)

The challenge of truly cryptic diversity: Diagnosis and description of a new madtom catfish (Ictaluridae: Noturus)

Egge, J. J. D. & Simons, A. M., Nov 1 2006, In : Zoologica Scripta. 35, 6, p. 581-595 15 p.

Research output: Contribution to journalReview article

Ictaluridae
Catfishes
Rivers
catfish
Ozarks
2008
58 Citations (Scopus)

Inferring the Tree of Life of the order Cypriniformes, the earth's most diverse clade of freshwater fishes: Implications of varied taxon and character sampling

Mayden, R. L., Tang, K. L., Wood, R. M., Chen, W. J., Agnew, M. K., Conway, K. W., Yang, L., Simons, A. M., Bart, H. L., Harris, P. M., Li, J., Wang, X., Saitoh, K., He, S., Liu, H., Chen, Y., Nishida, M. & Miya, M., Jan 1 2008, In : Journal of Systematics and Evolution. 46, 3, p. 424-438 15 p.

Research output: Contribution to journalArticle

Cypriniformes
freshwater fish
phylogenetics
phylogeny
sampling
21 Citations (Scopus)

Phylogeography of the bigeye chub Hybopsis amblops (Teleostei: Cypriniformes): Early Pleistocene diversification and post-glacial range expansion

Berendzen, P. B., Gamble, T. & Simons, A. M., Dec 1 2008, In : Journal of fish biology. 73, 8, p. 2021-2039 19 p.

Research output: Contribution to journalArticle

Cypriniformes
range expansion
phylogeography
Postglacial
Mississippi River
46 Citations (Scopus)

Recovering cryptic diversity and ancient drainage patterns in eastern North America: Historical biogeography of the Notropis rubellus species group (Teleostei: Cypriniformes)

Berendzen, P. B., Simons, A. M., Wood, R. M., Dowling, T. E. & Secor, C. L., Feb 1 2008, In : Molecular Phylogenetics and Evolution. 46, 2, p. 721-737 17 p.

Research output: Contribution to journalArticle

Cypriniformes
Notropis
North America
biogeography
Drainage
52 Citations (Scopus)

Species limits and phylogeography of North American cricket frogs (Acris: Hylidae)

Gamble, T., Berendzen, P. B., Bradley Shaffer, H., Starkey, D. E. & Simons, A. M., Jul 1 2008, In : Molecular Phylogenetics and Evolution. 48, 1, p. 112-125 14 p.

Research output: Contribution to journalArticle

Phylogeography
Gryllidae
cricket
Hylidae
phylogeography
51 Citations (Scopus)

Tertiary climate change and the diversification of the Amazonian gecko genus Gonatodes (Sphaerodactylidae, Squamata)

Gamble, T., Simons, A. M., Colli, G. R. & Vitt, L. J., Jan 1 2008, In : Molecular Phylogenetics and Evolution. 46, 1, p. 269-277 9 p.

Research output: Contribution to journalArticle

Genetic Speciation
Lizards
Climate Change
Gekkonidae
Squamata
2009
12 Citations (Scopus)
Ictaluridae
Actinopterygii
catfish
phylogenetics
phylogeny
105 Citations (Scopus)

Reconstructing the phylogenetic relationships of the earth's most diverse clade of freshwater fishes-order Cypriniformes (Actinopterygii: Ostariophysi): A case study using multiple nuclear loci and the mitochondrial genome

Mayden, R. L., Chen, W. J., Bart, H. L., Doosey, M. H., Simons, A. M., Tang, K. L., Wood, R. M., Agnew, M. K., Yang, L., Hirt, M. V., Clements, M. D., Saitoh, K., Sado, T., Miya, M. & Nishida, M., Jun 1 2009, In : Molecular Phylogenetics and Evolution. 51, 3, p. 500-514 15 p.

Research output: Contribution to journalArticle

Cypriniformes
Mitochondrial Genome
Actinopterygii
Fresh Water
freshwater fish

Systematics and Phylogenetic Relationships of Cypriniformes: A Comprehensive Review

Simons, A. M. & Gidmark, N. J., 2009, Gonorynchiformes and Ostariophysan Relationships: A Comprehensive Review. Grande, T., Pyato-Ariza, F. J. & Diogo, R. (eds.). Enfield, NJ: Science Publishers, p. 409-440

Research output: Chapter in Book/Report/Conference proceedingChapter

2010

Cypriniformes: Systematics & Paleontology: Festschrift in honor of G. Arratia

Conway, K. W., Hirt, M. V., Yang, L., Mayden, R. L. & Simons, A. M., 2010, Origin and Phylogenetic Interrelationships of Teleosts: Festschrift in honor of G. Arratia. Schultze, H. P., Nelson, J. S. & Wilson, M. V. H. (eds.). p. 295-316

Research output: Chapter in Book/Report/Conference proceedingChapter

102 Citations (Scopus)

Systematics of the subfamily Danioninae (Teleostei: Cypriniformes: Cyprinidae)

Tang, K. L., Agnew, M. K., Hirt, M. V., Sado, T., Schneider, L. M., Freyhof, J., Sulaiman, Z., Swartz, E., Vidthayanon, C., Miya, M., Saitoh, K., Simons, A. M., Wood, R. M. & Mayden, R. L., Oct 1 2010, In : Molecular Phylogenetics and Evolution. 57, 1, p. 189-214 26 p.

Research output: Contribution to journalArticle

Cypriniformes
Cyprinidae
Zebrafish
Danio
Danio rerio
2011
143 Citations (Scopus)

Coming to America: Multiple origins of New World geckos

Gamble, T., Bauer, A. M., Colli, G. R., Greenbaum, E., Jackman, T. R., Vitt, L. J. & Simons, A. M., Feb 1 2011, In : Journal of evolutionary biology. 24, 2, p. 231-244 14 p.

Research output: Contribution to journalArticle

Gekkonidae
phylogeny
herpetofauna
phylogenetics
land bridge
5 Citations (Scopus)

Evolution of venom delivery structures in madtom catfishes (Siluriformes: Ictaluridae)

Egge, J. J. D. & Simons, A. M., Jan 1 2011, In : Biological Journal of the Linnean Society. 102, 1, p. 115-129 15 p.

Research output: Contribution to journalArticle

Ictaluridae
venom
Siluriformes
venoms
catfish
16 Citations (Scopus)

Gill arch and hyoid arch diversity and cypriniform phylogeny: Distributed integration of morphology and web-based tools

Mabee, P. M., Grey, E. A., Arratia, G., Bogutskaya, N., Boron, A., Coburn, M. M., Conway, K. W., He, S., Naseka, A., Rios, N., Simons, A., Szlachciak, J. & Wang, X., May 13 2011, In : Zootaxa. 2877, p. 1-40 40 p.

Research output: Contribution to journalArticle

arch
gills
phylogeny
fish
62 Citations (Scopus)

Phylogeny of the gudgeons (Teleostei: Cyprinidae: Gobioninae)

Tang, K. L., Agnew, M. K., Chen, W. J., Vincent Hirt, M., Raley, M. E., Sado, T., Schneider, L. M., Yang, L., Bart, H. L., He, S., Liu, H., Miya, M., Saitoh, K., Simons, A. M., Wood, R. M. & Mayden, R. L., Oct 1 2011, In : Molecular Phylogenetics and Evolution. 61, 1, p. 103-124 22 p.

Research output: Contribution to journalArticle

Cyprinidae
cyprinid
Phylogeny
cytochrome
Fishes
2012
43 Citations (Scopus)

Molecular phylogeny of the cyprinid tribe Labeonini (Teleostei: Cypriniformes)

Yang, L., Arunachalam, M., Sado, T., Levin, B. A., Golubtsov, A. S., Freyhof, J., Friel, J. P., Chen, W. J., Vincent Hirt, M., Manickam, R., Agnew, M. K., Simons, A. M., Saitoh, K., Miya, M., Mayden, R. L. & He, S., Nov 1 2012, In : Molecular Phylogenetics and Evolution. 65, 2, p. 362-379 18 p.

Research output: Contribution to journalArticle

Cypriniformes
cyprinid
Phylogeny
phylogeny
taxonomic revisions
12 Citations (Scopus)

Phylogenetic placements of the barbin genera Discherodontus, Chagunius, and Hypselobarbus in the subfamily Cyprininae (Teleostei: Cypriniformes) and their relationships with other barbins

Yang, L., Vincent Hirt, M., Sado, T., Arunachalam, M., Manickam, R., Tang, K. L., Simons, A. M., Wu, H. H., Mayden, R. L. & Miya, M., Dec 14 2012, In : Zootaxa. 3586, p. 26-40 15 p.

Research output: Contribution to journalArticle

Cypriniformes
cytochrome
phylogeny
phylogenetics
maximum likelihood analysis
43 Citations (Scopus)

Phylogeny and cryptic diversity in geckos (Phyllopezus; Phyllodactylidae; Gekkota) from South America's open biomes

Gamble, T., Colli, G. R., Rodrigues, M. T., Werneck, F. P. & Simons, A. M., Mar 1 2012, In : Molecular Phylogenetics and Evolution. 62, 3, p. 943-953 11 p.

Research output: Contribution to journalArticle

Lizards
South America
Gekkonidae
Phylogeny
biome
21 Citations (Scopus)

Rapid diversification in the North American minnow genus Nocomis

Nagle, B. C. & Simons, A. M., Jun 1 2012, In : Molecular Phylogenetics and Evolution. 63, 3, p. 639-649 11 p.

Research output: Contribution to journalArticle

Cyprinidae
minnows
Rivers
rivers
river
2013
3 Citations (Scopus)
Phalacrocorax auritus
leech
prey selection
Hirudinea
Phalacrocorax
21 Citations (Scopus)

Explosive diversification following a benthic to pelagic shift in freshwater fishes

Hollingsworth, P. R., Simons, A. M., Fordyce, J. A. & Hulsey, C. D., Dec 17 2013, In : BMC Evolutionary Biology. 13, 1, 272.

Research output: Contribution to journalArticle

freshwater fish
explosive
habitat
fish
habitats
13 Citations (Scopus)

Limits and phylogenetic relationships of East Asian fishes in the subfamily Oxygastrinae (Teleostei: Cypriniformes: Cyprinidae)

Tang, K. L., Agnew, M. K., Hirt, M. V., Lumbantobing, D. N., Raley, M. E., Sado, T., Teoh, V. H., Yang, L., Bart, H. L., Harris, P. M., He, S., Miya, M., Saitoh, K., Simons, A. M., Wood, R. M. & Mayden, R. L., Jun 20 2013, In : Zootaxa. 3681, 2, p. 101-135 35 p.

Research output: Contribution to journalArticle

Hypophthalmichthys
Cypriniformes
Cyprinidae
Mylopharyngodon
Ctenopharyngodon
2014
16 Citations (Scopus)
Phylogeny
Ecosystem
phylogeny
habitat
habitats
11 Citations (Scopus)
Perches
Percidae
Etheostoma
introgression
Genetic Recombination
5 Citations (Scopus)

Cyprinidae: Carps and minnows

Gidmark, N. J. & Simons, A. M., Jan 1 2014, Freshwater Fishes of North America: Volume 1: Petromyzontidae to Catostomidae. Johns Hopkins University Press, p. 354-450 97 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Cyprinidae
minnows
Carps
carp
7 Citations (Scopus)

Molecular systematics and historical biogeography of the Nocomis biguttatus species group (Teleostei: Cyprinidae): Nuclear and mitochondrial introgression and a cryptic Ozark species

Echelle, A. A., Schwemm, M. R., Lang, N. J., Nagle, B. C., Simons, A. M., Unmack, P. J., Fisher, W. L. & Hoagstrom, C. W., Sep 22 2014, In : Molecular Phylogenetics and Evolution. 81, p. 109-119 11 p.

Research output: Contribution to journalArticle

Ozarks
Cyprinidae
molecular systematics
introgression
Rivers
2015
89 Citations (Scopus)

Phylogeny and polyploidy: Resolving the classification of cyprinine fishes (Teleostei: Cypriniformes)

Yang, L., Sado, T., Vincent Hirt, M., Pasco-Viel, E., Arunachalam, M., Li, J., Wang, X., Freyhof, J., Saitoh, K., Simons, A. M., Miya, M., He, S. & Mayden, R. L., Apr 1 2015, In : Molecular Phylogenetics and Evolution. 85, p. 97-116 20 p.

Research output: Contribution to journalArticle

Cypriniformes
polyploidy
Polyploidy
Phylogeny
Fishes
8 Citations (Scopus)

The first report of luminescent liver tissue in fishes: Evolution and structure of bioluminescent organs in the deep-sea naked barracudinas (Aulopiformes: Lestidiidae)

Ghedotti, M. J., Barton, R. W., Simons, A. M. & Davis, M. P., Mar 1 2015, In : Journal of Morphology. 276, 3, p. 310-318 9 p.

Research output: Contribution to journalArticle

Aulopiformes
Oceans and Seas
Fishes
Light
liver
2017
6 Citations (Scopus)

Diets and trophic guilds of small fishes from coastal marine habitats in western Taiwan

Egan, J. P., Chew, U. S., Kuo, C. H., Villarroel-Diaz, V., Hundt, P. J., Iwinski, N. G., Hammer, M. P. & Simons, A. M., Jun 1 2017, In : Journal of Fish Biology. 91, 1, p. 331-345 15 p.

Research output: Contribution to journalArticle

guild
Taiwan
diet
habitat
fish
4 Citations (Scopus)

Effects of gene choice, base composition and rate heterogeneity on inference and estimates of divergence times in cypriniform fishes

Hirt, M. V., Arratia, G., Chen, W. J., Mayden, R. L., Tang, K. L., Wood, R. M. & Simons, A. M., Jan 1 2017, In : Biological Journal of the Linnean Society. 121, 2, p. 319-339 21 p.

Research output: Contribution to journalArticle

Cypriniformes
fossils
divergence
gene
phylogeny
1 Citation (Scopus)

Small fishes crossed a large mountain range: Quaternary stream capture events and freshwater fishes on both sides of the Taebaek Mountains

Kim, D., Hirt, M. V., Won, Y. J. & Simons, A. M., Jul 1 2017, In : Integrative Zoology. 12, 4, p. 292-302 11 p.

Research output: Contribution to journalArticle

freshwater fish
mountains
rivers
fish
Korean Peninsula
3 Citations (Scopus)
Fundulus
Cyprinodontiformes
phylogeography
introns
cytochrome b