University of Minnesota Rochester

2024

Selection Bias from Data Processing in N3C

N3C Consortium, 2024, Proceedings - 2024 IEEE 12th International Conference on Healthcare Informatics, ICHI 2024. Institute of Electrical and Electronics Engineers Inc., p. 234-241 8 p. (Proceedings - 2024 IEEE 12th International Conference on Healthcare Informatics, ICHI 2024).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

2 Scopus citations

2023

Investigating the Impact of Temporal Labeling of Emergency Department Visits for COVID-19: Comparing Healthcare Disparities Analyses Using Comprehensive, Single-Site Data with National COVID Cohort Collaborative (N3C) Data

Jones, M., Winger, A., Wernz, C., Michel, J., Jiang, S., Zhou, A., Hilton, E. J., Zemmel, M., Sengupta, S., Barnes, K., Loomba, J., Brown, D. E., Wilcox, A. B., Lee, A. M., Graves, A., Anzalone, A., Manna, A., Saha, A., Olex, A. & Williams, A. E. & 116 others, Southerland, A., Girvin, A. T., Walden, A., Sharathkumar, A. A., Amor, B., Bates, B., Hendricks, B., Patel, B., Alexander, C., Bramante, C., Ward-Caviness, C., Madlock-Brown, C., Suver, C., Chute, C. G., Dillon, C., Wu, C., Schmitt, C., Takemoto, C., Housman, D., Gabriel, D., Eichmann, D. A., Mazzotti, D., Boudreau, E., Hill, E., Zampino, E., Marti, E. C., Pfaff, E. R., French, E., Koraishy, F. M., Mariona, F., Prior, F., Sokos, G., Martin, G., Lehmann, H., Spratt, H., Mehta, H., Liu, H., Sidky, H., Awori Hayanga, J. W., Pincavitch, J., Clark, J., Richard Harper, J., Islam, J., Ge, J., Gagnier, J., Saltz, J. H., Buse, J., Mathew, J., Rutter, J. L., McMurry, J. A., Guinney, J., Starren, J., Crowley, K., Bradwell, K. R., Walters, K. M., Wilkins, K., Gersing, K. R., Cato, K. D., Murray, K., Kostka, K., Northington, L., Pyles, L. A., Misquitta, L., Cottrell, L., Portilla, L., Deacy, M., Bissell, M. M., Clark, M., Emmett, M., Saltz, M. M., Palchuk, M. B., Haendel, M. A., Adams, M., Temple-O'Connor, M., Kurilla, M. G., Morris, M., Qureshi, N., Safdar, N., Garbarini, N., Sharafeldin, N., Sadan, O., Francis, P. A., Burgoon, P. W., Robinson, P., Payne, P. R. O., Fuentes, R., Jawa, R., Erwin-Cohen, R., Patel, R., Moffitt, R. A., Zhu, R. L., Kamaleswaran, R., Hurley, R., Miller, R. T., Pyarajan, S., Michael, S. G., Bozzette, S., Mallipattu, S., Vedula, S., Chapman, S., O'Neil, S. T., Setoguchi, S., Hong, S. S., Johnson, S., Bennett, T. D., Callahan, T., Topaloglu, U., Sheikh, U., Gordon, V., Subbian, V., Kibbe, W. A., Hernandez, W., Beasley, W., Cooper, W., Hillegass, W. & Zhang, X. T., 2023, 2023 Systems and Information Engineering Design Symposium, SIEDS 2023. Institute of Electrical and Electronics Engineers Inc., p. 297-302 6 p. (2023 Systems and Information Engineering Design Symposium, SIEDS 2023).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Open Access

2022

A New TDA-based machine learning Classifier Framework for Predicting Hepatic Decompensation from MR Images

Singh, Y., Jons, W., Eaton, J. E., Sobek, J. D., Jagtap, J., Conte, G. M., Fuemmeler, E. G., Zhang, K., Wei, Y., Garcia, D. V. V. & Erickson, B. J., 2022, Medical Imaging 2022: Imaging Informatics for Healthcare, Research, and Applications. Deserno, T. M., Deserno, T. M. & Park, B. J. (eds.). SPIE, 120370I. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 12037).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

1 Scopus citations

2020

Application of neurois tools to understand cognitive behaviors of student learners in biochemistry

Randolph, A., Mekbib, S., Calvert, J., Cortes, K. & Terrell, C., 2020, Information Systems and Neuroscience - NeuroIS Retreat 2019. Davis, F. D., Riedl, R., Riedl, R., vom Brocke, J., Léger, P.-M., Randolph, A. & Fischer, T. (eds.). Springer, p. 239-243 5 p. (Lecture Notes in Information Systems and Organisation; vol. 32).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

3 Scopus citations

Neuromorphic representation of cardiac data from the American black bear during hibernation

Iles, T. L., Laske, T. G., Iaizzo, P. A. & Tsur, E. E., May 11 2020, Proceedings of the 2021 Design of Medical Devices Conference, DMD 2021. American Society of Mechanical Engineers, V001T09A002. (Proceedings of the 2021 Design of Medical Devices Conference, DMD 2021).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Using NeuroIS Tools to Understand How Individual Characteristics Relate to Cognitive Behaviors of Students

Jones, T., Randolph, A. B., Cortes, K. & Terrell, C., 2020, Information Systems and Neuroscience - NeuroIS Retreat 2020. Davis, F. D., Riedl, R., vom Brocke, J., Léger, P.-M., Randolph, A. B. & Fischer, T. (eds.). Springer Science and Business Media Deutschland GmbH, p. 181-184 4 p. (Lecture Notes in Information Systems and Organisation; vol. 43).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

1 Scopus citations

2019

A two-fold enhancement of ultrasound vessel images using a non-local based restoration and morphological filtering

Adabi, S., Ghavami, S., Bayat, M., Fatemi, M. & Alizad, A., 2019, Medical Imaging 2019: Ultrasonic Imaging and Tomography. Byram, B. C. & Ruiter, N. V. (eds.). SPIE, 1095506. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 10955).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

1 Scopus citations

2018

Concurrent Clutter and Noise Suppression via Low Rank Plus Sparse Optimization for Non-Contrast Ultrasound Flow Doppler Processing in Microvasculature

Bayat, M. & Fatemi, M., Sep 10 2018, 2018 IEEE International Conference on Acoustics, Speech, and Signal Processing, ICASSP 2018 - Proceedings. Institute of Electrical and Electronics Engineers Inc., p. 1080-1084 5 p. 8461638. (ICASSP, IEEE International Conference on Acoustics, Speech and Signal Processing - Proceedings; vol. 2018-April).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

26 Scopus citations

Multi-rate higher order singular value decomposition for enhanced non-contrast ultrasound Doppler imaging of slow flow

Bayat, M., Alizad, A. & Fatemi, M., May 23 2018, 2018 IEEE 15th International Symposium on Biomedical Imaging, ISBI 2018. IEEE Computer Society, p. 1178-1181 4 p. (Proceedings - International Symposium on Biomedical Imaging; vol. 2018-April).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

5 Scopus citations

2017

Acoustoelasticity modeling of bladder tissue nonlinearity: Ex vivo study

Bayat, M., Singh, A., Webb, J., Kumar, V., Gregory, A., Alizad, A. & Fatemi, M., Oct 31 2017, 2017 IEEE International Ultrasonics Symposium, IUS 2017. IEEE Computer Society, 8091856. (IEEE International Ultrasonics Symposium, IUS).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Acoustoelasticity modeling of bladder tissue nonlinearity: Ex vivo study

Bayat, M., Singh, A., Webb, J., Kumar, V., Gregory, A., Alizad, A. & Fatemi, M., Oct 31 2017, 2017 IEEE International Ultrasonics Symposium, IUS 2017. IEEE Computer Society, 8092788. (IEEE International Ultrasonics Symposium, IUS).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

1 Scopus citations

Medtronic reveal LINQTM devices provide better understanding of hibernation physiology in the American black bear (ursus Americanus)

Iles, T. L., Laske, T. G., Garshelis, D. L., Mattison, L., Lee, B., Eisele, V., Gaasedelen, E. & Iaizzo, P. A., 2017, Frontiers in Biomedical Devices, BIOMED - 2017 Design of Medical Devices Conference, DMD 2017. American Society of Mechanical Engineers, (Frontiers in Biomedical Devices, BIOMED - 2017 Design of Medical Devices Conference, DMD 2017).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Open Access

2 Scopus citations

Multiscale frequency technique robustly discriminates normal sinus rhythm and atrial fibrillation on a single lead electrocardiogram

Arunachalam, S. P., Annoni, E. M., Kapa, S., Mulpuru, S. K., Friedman, P. A. & Tolkacheva, E. G., 2017, 54th Annual Rocky Mountain Bioengineering Symposium, RMBS 2017 and 54th International ISA Biomedical Sciences Instrumentation Symposium 2017. International Society of Automation (ISA), (54th Annual Rocky Mountain Bioengineering Symposium, RMBS 2017 and 54th International ISA Biomedical Sciences Instrumentation Symposium 2017; vol. 2017-March).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

4 Scopus citations

Notice of Removal: Viscoelastic properties of breast masses: A frequency dispersion analysis using acoustic radiation force

Kumar, V., Bayat, M., Denis, M., Gregory, A., Webb, J., Whaley, D., Fatemi, M. & Alizad, A., Oct 31 2017, 2017 IEEE International Ultrasonics Symposium, IUS 2017. IEEE Computer Society, 8092758. (IEEE International Ultrasonics Symposium, IUS; vol. 0).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Notice of Removal: Background-free visualization of microvasculature networks

Bayat, M., Fatemi, M. & Alizad, A., Oct 31 2017, 2017 IEEE International Ultrasonics Symposium, IUS 2017. IEEE Computer Society, 8092668. (IEEE International Ultrasonics Symposium, IUS; vol. 0).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

2015

An experimental phantom study on the effect of calcifications on ultrasound shear wave elastography

Gregory, A., Bayat, M., Denis, M., Mehrmohammadi, M., Fatemi, M. & Alizad, A., Nov 4 2015, 2015 37th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2015. Institute of Electrical and Electronics Engineers Inc., p. 3843-3846 4 p. 7319232. (Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS; vol. 2015-November).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

7 Scopus citations

Challenges in estimation of tissue elasticity using low-frequency shear waves

Fatemi, M., Gregory, A., Bayat, M., Denis, M. & Alizad, A., 2015, 22nd International Congress on Sound and Vibration, ICSV 2015. International Institute of Acoustics and Vibrations, (22nd International Congress on Sound and Vibration, ICSV 2015).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

1 Scopus citations

How calcifications affect shear wave speed estimations? An experimental study

Gregory, A., Bo, Q., Bayat, M., Denis, M., Mehrmohammadi, M., Fatemi, M. & Alizad, A., Nov 13 2015, 2015 IEEE International Ultrasonics Symposium, IUS 2015. Institute of Electrical and Electronics Engineers Inc., 7329268. (2015 IEEE International Ultrasonics Symposium, IUS 2015).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Pixel-based ultrasound image reconstruction: Impact of grid size on signal frequency content

Bayat, M., Nabavizadeh, A., Alizad, A. & Fatemi, M., Nov 13 2015, 2015 IEEE International Ultrasonics Symposium, IUS 2015. Institute of Electrical and Electronics Engineers Inc., 7329429. (2015 IEEE International Ultrasonics Symposium, IUS 2015).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

2011

Divide-and-conquer approach to the parallel computation of elementary flux modes in metabolic networks

Jevremovic, D., Boley, D. L. & Sosa, C. P., 2011, 2011 IEEE International Symposium on Parallel and Distributed Processing, Workshops and Phd Forum, IPDPSW 2011. p. 502-511 10 p. 6008870. (IEEE International Symposium on Parallel and Distributed Processing Workshops and Phd Forum).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

11 Scopus citations

Instrumentation enabling the chronic assessment of neural activity: A novel case study of hibernation in Ursus americanus

Laske, T. G., Garshelis, D. L., Iaizzo, P. A., Carlson, D., Jensen, R., Stanslaski, S., Weiss, S., Afshar, P., Cong, P. & Denison, T., 2011, 2011 IEEE Biomedical Circuits and Systems Conference, BioCAS 2011. p. 102-105 4 p. 6107737. (2011 IEEE Biomedical Circuits and Systems Conference, BioCAS 2011).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

1 Scopus citations

2009

High-magnetic-moment nanoparticles for biomedicine

Jing, Y., He, S., Kline, T., Xu, Y. & Wang, J., 2009, Proceedings of the 31st Annual International Conference of the IEEE Engineering in Medicine and Biology Society: Engineering the Future of Biomedicine, EMBC 2009. IEEE Computer Society, p. 4483-4486 4 p. 5333679. (Proceedings of the 31st Annual International Conference of the IEEE Engineering in Medicine and Biology Society: Engineering the Future of Biomedicine, EMBC 2009).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

6 Scopus citations

2008

Learning on weighted hypergraphs to integrate protein interactions and gene expressions for cancer outcome prediction

Hwang, T., Tian, Z., Kuang, R. & Kocher, J. P., 2008, Proceedings - 8th IEEE International Conference on Data Mining, ICDM 2008. p. 293-302 10 p. 4781124. (Proceedings - IEEE International Conference on Data Mining, ICDM).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

60 Scopus citations

2006

An end-to-end supervised target-word sense disambiguation system

Joshi, M., Pakhomov, S., Pedersen, T., Machn, R. & Chute, C., 2006, Proceedings of the 21st National Conference on Artificial Intelligence and the 18th Innovative Applications of Artificial Intelligence Conference, AAAI-06/IAAI-06. p. 1941-1942 2 p. (Proceedings of the National Conference on Artificial Intelligence; vol. 2).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

1 Scopus citations

2005

Object-based commutativity analysis for real-time applications

Eberhard, J. & Tripathi, A., 2005, Proceedings - 10th IEEE International Workshop on Object-Oriented Real-Time Dependable Systems, WORDS 2005. p. 279-286 8 p. (Proceedings - International Workshop on Object-Oriented Real-Time Dependable Systems, WORDS).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

2 Scopus citations

2001

Efficient object caching for distributed java RMI applications

Eberhard, J. & Tripathi, A. R., 2001, Middleware 2001: IFIP/ACM International Conference on Distributed Systems Platforms, Proceedings. Guerraoui, R. (ed.). Springer Verlag, p. 15-35 21 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 2218).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Open Access

16 Scopus citations

University of Minnesota Rochester

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