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2020

Soft X-ray Absorption Spectroscopy and Magnetic Circular Dichroism as Operando Probes of Complex Oxide Electrolyte Gate Transistors

Yu, B., Yu, G., Walter, J., Chaturvedi, V., Gotchnik, J., Freeland, J. W., Leighton, C. & Greven, M., May 21 2020, In : Applied Physics Letters.

Research output: Contribution to journalArticle

Spatial Distribution of PEO-PPO-PEO Block Copolymer and PEO Homopolymer in Lipid Bilayers

Kim, M., Heinrich, F., Haugstad, G., Yu, G., Yuan, G., Satija, S. K., Zhang, W., Seo, H. S., Metzger, J. M., Azarin, S. M., Lodge, T. P., Hackel, B. J. & Bates, F. S., Apr 7 2020, In : Langmuir. 36, 13, p. 3393-3403

Research output: Contribution to journalArticle

The hepatic transcriptome of the turkey poult (Meleagris gallopavo) is minimally altered by high inorganic dietary selenium

Taylor, R. M., Mendoza, K. M., Abrahante, J. E., Reed, K. M. & Sunde, R. A., May 2020, In : PloS one. 15, 5, e0232160.

Research output: Contribution to journalArticle

Open Access
2019

A Cell Proliferation and Inflammatory Signature Is Induced by Lawsonia intracellularis Infection in Swine

Leite, F. L., Abrahante, J. E., Vasquez, E., Vannucci, F., Gebhart, C. J., Winkelman, N., Mueller, A., Torrison, J., Rambo, Z. & Isaacson, R. E., Jan 29 2019, In : mBio. 10, 1

Research output: Contribution to journalArticle

Open Access
2 Scopus citations

Chrysalis: A new method for high-throughput histo-cytometry analysis of images and movies

Kotov, D. I., Pengo, T., Mitchell, J. S., Gastinger, M. J. & Jenkins, M. K., Jan 1 2019, In : Journal of Immunology. 202, 1, p. 300-308 9 p.

Research output: Contribution to journalArticle

Open Access
2 Scopus citations

Evidence for a universal Fermi-liquid scattering rate throughout the phase diagram of the copper-oxide superconductors

Barišić, N., Chan, M. K., Veit, M. J., Dorow, C. J., Ge, Y., Li, Y., Tabis, W., Tang, Y., Yu, G., Zhao, X. & Greven, M., Nov 1 2019, In : New Journal of Physics. 21, 11, 113007.

Research output: Contribution to journalArticle

Open Access

Hole pocket–driven superconductivity and its universal features in the electron-doped cuprates

Li, Y., Tabis, W., Tang, Y., Yu, G., Jaroszynski, J., Barišić, N. & Greven, M., Feb 1 2019, In : Science Advances. 5, 2, p. eaap7349 eaap7349.

Research output: Contribution to journalArticle

Open Access
8 Scopus citations
3 Scopus citations

IFN-I response timing relative to virus replication determines MERS coronavirus infection outcomes

Channappanavar, R., Fehr, A. R., Zheng, J., Wohlford-Lenane, C., Abrahante, J. E., Mack, M., Sompallae, R., McCray, P. B., Meyerholz, D. K. & Perlman, S., Sep 3 2019, In : Journal of Clinical Investigation. 129, 9, p. 3625-3639 15 p.

Research output: Contribution to journalArticle

Open Access
8 Scopus citations

Long-term tolerance of islet allografts in nonhuman primates induced by apoptotic donor leukocytes

Singh, A., Ramachandran, S., Graham, M. L., Daneshmandi, S., Heller, D., Suarez-Pinzon, W. L., Balamurugan, A. N., Ansite, J. D., Wilhelm, J. J., Yang, A., Zhang, Y., Palani, N. P., Abrahante, J. E., Burlak, C., Miller, S. D., Luo, X. & Hering, B. J., Dec 1 2019, In : Nature communications. 10, 1, 3495.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations

Role of cpxr in biofilm development: Expression of key fimbrial, o-antigen and virulence operons of salmonella enteritidis

Shetty, D., Abrahante, J. E., Chekabab, S. M., Wu, X., Korber, D. R. & Vidovic, S., Oct 2 2019, In : International journal of molecular sciences. 20, 20, 5146.

Research output: Contribution to journalArticle

Open Access

TCR affinity biases th cell differentiation by regulating CD25, EEF1E1, and GBP2

Kotov, D. I., Mitchell, J. S., Pengo, T., Ruedl, C., Way, S. S., Langlois, R. A., Fife, B. T. & Jenkins, M. K., May 1 2019, In : Journal of Immunology. 202, 9, p. 2535-2545 11 p.

Research output: Contribution to journalArticle

2 Scopus citations
Open Access

Universal precursor of superconductivity in the cuprates

Yu, G., Xia, D. D., Pelc, D., He, R. H., Kaneko, N. H., Sasagawa, T., Li, Y., Zhao, X., Barišić, N., Shekhter, A. & Greven, M., Jun 10 2019, In : Physical Review B. 99, 21, 214502.

Research output: Contribution to journalArticle

2 Scopus citations

Wide-voltage-window reversible control of electronic transport in electrolyte-gated epitaxial BaSnO3

Wang, H., Walter, J., Ganguly, K., Yu, B., Yu, G., Zhang, Z., Zhou, H., Fu, H., Greven, M. & Leighton, C., Jul 2 2019, In : Physical Review Materials. 3, 7, 075001.

Research output: Contribution to journalArticle

2 Scopus citations
2018

Aptamer micelles targeting fractalkine-expressing cancer cells in vitro and in vivo

Harris, M. A., Pearce, T. R., Pengo, T., Kuang, H., Forster, C. & Kokkoli, E., Jan 2018, In : Nanomedicine: Nanotechnology, Biology, and Medicine. 14, 1, p. 85-96 12 p.

Research output: Contribution to journalArticle

8 Scopus citations

Can 5-methylcytosine analogues with extended alkyl side chains guide DNA methylation?

Kotandeniya, D., Seiler, C. L., Fernandez, J., Pujari, S. S., Curwick, L., Murphy, K., Wickramaratne, S., Yan, S., Murphy, D., Sham, Y. Y. & Tretyakova, N. Y., Jan 1 2018, In : Chemical Communications. 54, 9, p. 1061-1064 4 p.

Research output: Contribution to journalArticle

Open Access
5 Scopus citations

Colorectal cancer mutational profiles correlate with defined microbial communities in the tumor microenvironment

Burns, M. B., Montassier, E., Abrahante, J., Priya, S., Niccum, D. E., Khoruts, A., Starr, T. K., Knights, D. & Blekhman, R., Jun 2018, In : PLoS genetics. 14, 6, e1007376.

Research output: Contribution to journalArticle

Open Access
16 Scopus citations

Comparative response of the hepatic transcriptomes of domesticated and wild turkey to aflatoxin B1

Reed, K. M., Mendoza, K. M., Abrahante, J. E. & Coulombe, R. A., Jan 13 2018, In : Toxins. 10, 1, 42.

Research output: Contribution to journalArticle

Open Access
6 Scopus citations
Open Access
1 Scopus citations

Emergence of superconductivity in the cuprates via a universal percolation process

Pelc, D., Vučković, M., Grbić, M. S., Požek, M., Yu, G., Sasagawa, T., Greven, M. & Barišić, N., Dec 1 2018, In : Nature communications. 9, 1, 4327.

Research output: Contribution to journalArticle

Open Access
8 Scopus citations

Growth and characterization of HgBa 2 CaCu 2 O6+δ and HgBa 2 Ca 2 Cu 3 O8+δ crystals

Wang, L., Luo, X., Li, J., Zeng, J., Cheng, M., Freyermuth, J., Tang, Y., Yu, B., Yu, G., Greven, M. & Li, Y., Dec 7 2018, In : Physical Review Materials. 2, 12, 123401.

Research output: Contribution to journalArticle

Open Access

Percolative nature of the direct-current paraconductivity in cuprate superconductors

Popčević, P., Pelc, D., Tang, Y., Velebit, K., Anderson, Z., Nagarajan, V., Yu, G., Požek, M., Barišić, N. & Greven, M., Dec 1 2018, In : npj Quantum Materials. 3, 1, 42.

Research output: Contribution to journalArticle

Open Access
8 Scopus citations

RNA Sequencing of Carboplatin- and Paclitaxel-Resistant Endometrial Cancer Cells Reveals New Stratification Markers and Molecular Targets for Cancer Treatment

Hellweg, R., Mooneyham, A., Chang, Z., Shetty, M., Emmings, E., Iizuka, Y., Clark, C., Starr, T., Abrahante, J. H., Schütz, F., Konecny, G., Argenta, P. & Bazzaro, M., Oct 1 2018, In : Hormones and Cancer. 9, 5, p. 326-337 12 p.

Research output: Contribution to journalArticle

1 Scopus citations

Salmonella Persist in Activated Macrophages in T Cell-Sparse Granulomas but Are Contained by Surrounding CXCR3 Ligand-Positioned Th1 Cells

Goldberg, M. F., Roeske, E. K., Ward, L. N., Pengo, T., T, D., Kotov, D. I. & Jenkins, M., Dec 18 2018, In : Immunity. 49, 6, p. 1090-1102.e7

Research output: Contribution to journalArticle

Open Access
4 Scopus citations

Single Cell Resolution of Human Hematoendothelial Cells Defines Transcriptional Signatures of Hemogenic Endothelium

Angelos, M. G., Abrahante, J. E., Blum, R. H. & Kaufman, D. S., Feb 1 2018, In : STEM CELLS. 36, 2, p. 206-217 12 p.

Research output: Contribution to journalArticle

Open Access
5 Scopus citations

Transposon mutagenesis screen in mice identifies TM9SF2 as a novel colorectal cancer oncogene

Clark, C. R., Maile, M., Blaney, P., Hellweg, S. R., Strauss, A., Durose, W., Priya, S., Habicht, J., Burns, M. B., Blekhman, R., Abrahante, J. E. & Starr, T. K., Dec 1 2018, In : Scientific reports. 8, 1, 15327.

Research output: Contribution to journalArticle

Open Access
4 Scopus citations
2017

A method for extracting and characterizing RNA from urine: For downstream PCR and RNAseq analysis

Zhou, K., Spillman, M. A., Behbakht, K., Komatsu, J. M., Abrahante - Llorens, J. E., Hicks, D., Schotl, B., Odean, E., Jones, K. L., Graner, M. W. & Bemis, L. T., Nov 1 2017, In : Analytical Biochemistry. 536, p. 8-15 8 p.

Research output: Contribution to journalArticle

Open Access
3 Scopus citations

A tRNA fragment, tRF5-Glu, regulates BCAR3 expression and proliferation in ovarian cancer cells

Zhou, K., Diebel, K. W., Holy, J. M., Skildum, A. J., Odean, E., Hicks, D. A., Schotl, B., Abrahante - Llorens, J. E., Spillman, M. A. & Bemis, L. T., Jan 1 2017, In : Oncotarget. 8, 56, p. 95377-95391 15 p.

Research output: Contribution to journalArticle

Open Access
11 Scopus citations

Chemical End Group Modified Diblock Copolymers Elucidate Anchor and Chain Mechanism of Membrane Stabilization

Houang, E. M., Haman, K. J., Kim, M., Zhang, W., Lowe, D. A., Sham, Y. Y., Lodge, T. P., Hackel, B. J., Bates, F. S. & Metzger, J. M., Jul 3 2017, In : Molecular pharmaceutics. 14, 7, p. 2333-2339 7 p.

Research output: Contribution to journalArticle

Open Access
13 Scopus citations

Cytotoxic t cells and granzyme b associated with improved colorectal cancer survival in a prospective cohort of older women

Prizment, A. E., Vierkant, R. A., Smyrk, T. C., Tillmans, L. S., Nelson, H. H., Lynch, C. F., Pengo, T., Thibodeau, S. N., Church, T. R., Cerhan, J. R., Anderson, K. E. & Limburg, P. J., Apr 2017, In : Cancer Epidemiology Biomarkers and Prevention. 26, 4, p. 622-631 10 p.

Research output: Contribution to journalArticle

Open Access
11 Scopus citations

Data Descriptor: Transcriptomic analysis of gene signatures associated with sickle pain

Paul, J. A., Aich, A., Abrahante, J. E., Wang, Y., LaRue, R. S., Rathe, S. K., Kalland, K., Mittal, A., Jha, R., Peng, F., Largaespada, D. A., Bagchi, A. & Gupta, K., May 16 2017, In : Scientific Data. 4, 170051.

Research output: Contribution to journalArticle

Open Access
3 Scopus citations

Defined chromosome structure in the genome-reduced bacterium Mycoplasma pneumoniae

Trussart, M., Yus, E., Martinez, S., Baù, D., Tahara, Y. O., Pengo, T., Widjaja, M., Kretschmer, S., Swoger, J., Djordjevic, S., Turnbull, L., Whitchurch, C., Miyata, M., Marti-Renom, M. A., Lluch-Senar, M. & Serrano, L., Mar 8 2017, In : Nature communications. 8, 14665.

Research output: Contribution to journalArticle

Open Access
29 Scopus citations

Discovery of 1-Hydroxypyridine-2(1H)-thione-6-carboxylic Acid as a First-in-Class Low-Cytotoxic Nanomolar Metallo β-Lactamase Inhibitor

Shin, W. S., Bergstrom, A., Bonomo, R. A., Crowder, M. W., Muthyala, R. & Sham, Y. Y., Jan 1 2017, In : ChemMedChem. 12, 11, p. 845-849 5 p.

Research output: Contribution to journalArticle

Open Access
9 Scopus citations

Establishing a Large-Animal Model for in Vivo Reprogramming of Bile Duct Cells into Insulin-Secreting Cells to Treat Diabetes

Hill, C. M., Banga, A., Abrahante, J. E., Yuan, C., Mutch, L. A., Janecek, J., O'Brien, T., Graham, M. L. & Dutton, J. R., Jun 2017, In : Human Gene Therapy Clinical Development. 28, 2, p. 87-95 9 p.

Research output: Contribution to journalArticle

1 Scopus citations

Response of turkey muscle satellite cells to thermal challenge. I. transcriptome effects in proliferating cells

Reed, K. M., Mendoza, K. M., Abrahante, J. E., Barnes, N. E., Velleman, S. G. & Strasburg, G. M., May 6 2017, In : BMC Genomics. 18, 1, 1 p., 352.

Research output: Contribution to journalArticle

Open Access
3 Scopus citations

Single cell sequencing reveals heterogeneity within ovarian cancer epithelium and cancer associated stromal cells

Winterhoff, B. J., Maile, M., Mitra, A. K., Sebe, A., Bazzaro, M., Geller, M. A., Abrahante, J. E., Klein, M., Hellweg, R., Mullany, S. A., Beckman, K., Daniel, J. & Starr, T. K., Mar 1 2017, In : Gynecologic oncology. 144, 3, p. 598-606 9 p.

Research output: Contribution to journalArticle

Open Access
24 Scopus citations
2016

Bypass of DNA-protein cross-links conjugated to the 7-deazaguanine position of DNA by translesion synthesis polymerases

Wickramaratne, S., Ji, S., Mukherjee, S., Su, Y., Pence, M. G., Lior-Hoffmann, L., Fu, I., Broyde, S., Guengerich, F. P., Distefano, M., Schãrer, O. D., Sham, Y. Y. & Tretyakova, N., Nov 4 2016, In : Journal of Biological Chemistry. 291, 45, p. 23589-23603 15 p.

Research output: Contribution to journalArticle

Open Access
16 Scopus citations

CFTR is a tumor suppressor gene in murine and human intestinal cancer

Than, B. L. N., Linnekamp, J. F., Starr, T., Largaespada, D. A., Rod, A., Zhang, Y., Bruner, V., Abrahante - Llorens, J. E., Schumann, A., Luczak, T., Niemczyk, A., O'Sullivan, G., Medema, J. P., Fijneman, R. J. A., Meijer, G. A., Van Den Broek, E., Hodges, C. A., Scott, P. M., Vermeulen, L. & Cormier, R. T., Aug 11 2016, In : Oncogene. 35, 32, p. 4191-4199 9 p.

Research output: Contribution to journalArticle

53 Scopus citations

CircTAIL-seq, a targeted method for deep analysis of RNA 3' tails, reveals transcript-specific differences by multiple metrics

Gazestani, V. H., Hampton, M., Abrahante, J. E., Salavati, R. & Zimmer, S. L., Mar 2016, In : RNA. 22, 3, p. 477-486 10 p.

Research output: Contribution to journalArticle

Open Access
7 Scopus citations

Design principles for peptide-amphiphile-induced liposomal receptor-targeting with intracellular thermosensitivity

Shroff, K., Liu, D., Aravalli, R. N., Forster, C. L., Pengo, T., Sanders, M. A., Ebbini, E. S. & Kokkoli, E., Jan 1 2016, In : ChemNanoMat. 2, 1, p. 42-48 7 p.

Research output: Contribution to journalArticle

3 Scopus citations

Slx5/Slx8 Promotes Replication Stress Tolerance by Facilitating Mitotic Progression

Thu, Y. M., Van Riper, S. K., Higgins, L. A., Zhang, T., Becker, J. R., Markowski, T. W., Nguyen, H. D., Griffin, T. J. & Bielinsky, A. K., May 10 2016, In : Cell reports. 15, 6, p. 1254-1265 12 p.

Research output: Contribution to journalArticle

Open Access
12 Scopus citations
2015

Draft genome sequence of Pasteurella multocida isolate P1062, isolated from bovine respiratory disease

Abrahante, J. E., Hunter, S. S., Maheswaran, S. K., Hauglund, M. J., Tatum, F. M. & Briggs, R. E., Jan 1 2015, In : Genome Announcements. 3, 5, e01254-15.

Research output: Contribution to journalArticle

1 Scopus citations

PALMsiever: A tool to turn raw data into results for single-molecule localization microscopy

Pengo, T., Holden, S. J. & Manley, S., Mar 1 2015, In : Bioinformatics. 31, 5, p. 797-798 2 p.

Research output: Contribution to journalArticle

17 Scopus citations

Quantitative evaluation of software packages for single-molecule localization microscopy

Sage, D., Kirshner, H., Pengo, T., Stuurman, N., Min, J., Manley, S. & Unser, M., Jul 30 2015, In : Nature Methods. 12, 8, p. 717-724 8 p.

Research output: Contribution to journalArticle

176 Scopus citations

The candidate cancer gene database: A database of cancer driver genes from forward genetic screens in mice

Abbott, K. L., Nyre, E. T., Abrahante, J., Ho, Y. Y., Vogel, R. I. & Starr, T. K., Jan 28 2015, In : Nucleic acids research. 43, D1, p. D844-D848

Research output: Contribution to journalArticle

51 Scopus citations
2014

A novel automated microscopy platform for multiresolution multispectral early detection of lung cancer cells in bronchoalveolar lavage samples

Pengo, T., Muñoz-Barrutía, A. & Ortiz-De-Solórzano, C., Sep 2014, In : IEEE Systems Journal. 8, 3, p. 985-994 10 p., 6671418.

Research output: Contribution to journalArticle

3 Scopus citations

A simple method for gene phasing using mate pair sequencing

Cradic, K. W., Murphy, S. J., Drucker, T. M., Sikkink, R. A., Eberhardt, N. L., Neuhauser, C., Vasmatzis, G. & Grebe, S. K. G., Feb 6 2014, In : BMC medical genetics. 15, 1, 19.

Research output: Contribution to journalArticle

5 Scopus citations

Draft genome sequences of two Pasteurella multocida strains isolated from buffaloes in India with hemorrhagic septicemia disease

Abrahante, J. E., Veeregowda, B. M., Hogtapur, S. S., Briggs, R. E., Maheswaran, S. K. & Sreevatsan, S., Jan 1 2014, In : Genome Announcements. 2, 4, e00798-14.

Research output: Contribution to journalArticle

1 Scopus citations