Research Output 1992 2019

2019

An integrated platform for mucin-type O-glycosylation network generation and visualization

Le, T., O’Brien, C., Gupta, U., Sousa, G., Daoutidis, P. & Hu, W-S., Jun 1 2019, In : Biotechnology and Bioengineering. 116, 6, p. 1341-1354 14 p.

Research output: Contribution to journalArticle

Glycosylation
Mucins
Polysaccharides
Visualization
Enzymes

Cortex-wide neural interfacing via transparent polymer skulls

Ghanbari, L., Carter, R. E., Rynes, M. L., Dominguez, J., Chen, G., Naik, A., Hu, J., Sagar, M. A. K., Haltom, L., Mossazghi, N., Gray, M. M., West, S. L., Eliceiri, K. W., Ebner, T. J. & Bangalore Kodandaramaiah, S., Dec 1 2019, In : Nature communications. 10, 1, 1500.

Research output: Contribution to journalArticle

Open Access
skull
cortexes
Skull
Polymers
Imaging techniques
1 Citation (Scopus)

Craniobot: A computer numerical controlled robot for cranial microsurgeries

Ghanbari, L., Rynes, M. L., Hu, J., Schulman, D. S., Johnson, G. W., Laroque, M., Shull, G. M. & Bangalore Kodandaramaiah, S., Dec 1 2019, In : Scientific reports. 9, 1, 1023.

Research output: Contribution to journalArticle

Microsurgery
Skull
Craniotomy
Brain
Bone and Bones
1 Citation (Scopus)

Epstein–Barr virus BORF2 inhibits cellular APOBEC3B to preserve viral genome integrity

Cheng, A. Z., Yockteng-Melgar, J., Jarvis, M. C., Malik-Soni, N., Borozan, I., Carpenter, M. A., McCann, J. L., Ebrahimi, D., Shaban, N. M., Marcon, E., Greenblatt, J., Brown, W. L., Frappier, L. & Harris, R., Jan 1 2019, In : Nature Microbiology. 4, 1, p. 78-88 11 p.

Research output: Contribution to journalLetter

Viral Genome
Viruses
Cytosine Deaminase
Herpesviridae
RNA Editing
1 Citation (Scopus)

G i/o protein-coupled receptors inhibit neurons but activate astrocytes and stimulate gliotransmission

Durkee, C. A., Covelo, A., Lines, J., Kofuji, P., Aguilar, J. & Araque, A., Jun 1 2019, In : Glia. 67, 6, p. 1076-1093 18 p.

Research output: Contribution to journalArticle

Gi-Go GTP-Binding Protein alpha Subunits
Astrocytes
G-Protein-Coupled Receptors
Neurons
Brain

Glycopolycation-DNA Polyplex Formulation N/P Ratio Affects Stability, Hemocompatibility, and in Vivo Biodistribution

Phillips, H. R., Tolstyka, Z. P., Hall, B. C., Hexum, J. K., Hackett, P. B. & Reineke, T. M., Apr 8 2019, In : Biomacromolecules. 20, 4, p. 1530-1544 15 p.

Research output: Contribution to journalArticle

Methacrylates
DNA
Polymers
Genes
Coagulation

Mast cells induce blood brain barrier damage in SCD by causing endoplasmic reticulum stress in the endothelium

Tran, H., Mittal, A., Sagi, V., Luk, K., Nguyen, A., Gupta, M., Nguyen, J., Lamarre, Y., Lei, J., Guedes, A. & Gupta, K., Jan 29 2019, In : Frontiers in Cellular Neuroscience. 13, p. 1-12 12 p., 56.

Research output: Contribution to journalArticle

Open Access
Endoplasmic Reticulum Stress
Sickle Cell Anemia
Blood-Brain Barrier
Mast Cells
Endothelium

Multivalent Ligand Binding to Cell Membrane Antigens: Defining the Interplay of Affinity, Valency, and Expression Density

Csizmar, C. M., Petersburg, J. R., Perry, T. J., Rozumalski, L., Hackel, B. J. & Wagner, C. R., Jan 9 2019, In : Journal of the American Chemical Society. 141, 1, p. 251-261 11 p.

Research output: Contribution to journalArticle

Cell Adhesion Molecules
Cell membranes
Antigens
Ligands
Cell Membrane

Time-dependent Pax3-mediated chromatin remodeling and cooperation with Six4 and Tead2 specify the skeletal myogenic lineage in developing mesoderm

Magli, A., Baik, J., Mills, L. J., Kwak, I., Dillon, B. S., Mondragon Gonzalez, R., Stafford, D. A., Swanson, S. A., Stewart, R., Thomson, J. A., Garry, D. J., Dynlacht, B. D., Perlingeiro, R. C. R. & Becker, P. B. (ed.), Feb 26 2019, In : PLoS Biology. 17, 2, p. e3000153

Research output: Contribution to journalArticle

2 Citations (Scopus)

UNC-45A is a novel microtubule-associated protein and regulator of paclitaxel sensitivity in ovarian cancer cells

Mooneyham, A., Iizuka, Y., Yang, Q., Coombes, C., McClellan, M., Shridhar, V., Emmings, E., Shetty, M., Chen, L., Ai, T., Meints, J., Lee, M. K., Gardner, M. K. & Bazzaro, M., Feb 1 2019, In : Molecular Cancer Research. 17, 2, p. 370-383 14 p.

Research output: Contribution to journalArticle

Microtubule-Associated Proteins
Paclitaxel
Ovarian Neoplasms
Spindle Apparatus
Microtubules
2018
2 Citations (Scopus)

Acidic pH-responsive polymer nanoparticles as a TLR7/8 agonist delivery platform for cancer immunotherapy

Kim, H., Sehgal, D., Kucaba, T. A., Ferguson, D. M., Griffith, T. S. & Panyam, J., Nov 28 2018, In : Nanoscale. 10, 44, p. 20851-20862 12 p.

Research output: Contribution to journalArticle

Polymers
Nanoparticles
T-cells
Gases
Antigens
1 Citation (Scopus)

Alignment of collagen matrices using magnetic nanowires and magnetic barcode readout using first order reversal curves (FORC) (invited)

Sharma, A., DiVito, M. D., Shore, D. E., Block, A. D., Pollock, K., Solheid, P., Feinberg, J. M., Modiano, J., Lam, C. H., Hubel, A. & Stadler, B. J. H., Aug 1 2018, In : Journal of Magnetism and Magnetic Materials. 459, p. 176-181 6 p.

Research output: Contribution to journalArticle

collagens
Collagen
Nanowires
readout
nanowires
6 Citations (Scopus)

Bacterial Adhesion to Ultrafiltration Membranes: Role of Hydrophilicity, Natural Organic Matter, and Cell-Surface Macromolecules

Binahmed, S., Hasane, A., Wang, Z., Mansurov, A. & Romero Vargas Castrillon, S., Jan 2 2018, In : Environmental Science and Technology. 52, 1, p. 162-172 11 p.

Research output: Contribution to journalArticle

Hydrophilicity
Ultrafiltration
ultrafiltration
Macromolecules
adhesion
2 Citations (Scopus)

Bimodal sensing of guidance cues in mechanically distinct microenvironments

Tabdanov, E. D. & Provenzano, P., Nov 20 2018, In : Nature Communications.

Research output: Contribution to journalArticle

cues
Fluidics
Cadherins
Cues
Adhesion

Cellular and molecular networking within the ecosystem of cancer cell communication via tunneling nanotubes

Lou, E., Zhai, E., Sarkari, A., Desir, S., Wong, P., Iizuka, Y., Yang, J., Subramanian, S., McCarthy, J., Bazzaro, M. & Steer, C. J., Oct 2 2018, In : Frontiers in Cell and Developmental Biology. 6, OCT, 95.

Research output: Contribution to journalArticle

Nanotubes
Cell Communication
Ecosystem
Neoplasms
Interdisciplinary Studies
3 Citations (Scopus)

Comparative toxicity assessment of novel Si quantum dots and their traditional Cd-based counterparts using bacteria models Shewanella oneidensis and Bacillus subtilis

Pramanik, S., Hill, S. K. E., Zhi, B., Hudson-Smith, N. V., Wu, J. J., White, J. N., McIntire, E. A., Kondeti, V. S. S. K., Lee, A. L., Bruggeman, P. J., Kortshagen, U. R. & Haynes, C. L., Jan 1 2018, In : Environmental Science: Nano. 5, 8, p. 1890-1901 12 p.

Research output: Contribution to journalArticle

Bacilli
Cadmium
Semiconductor quantum dots
Toxicity
Bacteria
12 Citations (Scopus)

Continuous treatment with IL-15 exhausts human NK cells via a metabolic defect

Felices, M., Lenvik, A. J., Mc Elmurry, R. T., Chu, S., Hinderlie, P., Bendzick, L., Geller, M. A., Tolar, J., Blazar, B. R. & Miller, J. S., Feb 8 2018, In : JCI insight. 3, 3

Research output: Contribution to journalArticle

Open Access
Interleukin-15
Natural Killer Cells
Therapeutics
cdc Genes
Fatty Acids

Cranial prostheses for pan-cortical neural interfacing

Ghanbari, L., Carter, R. E., Rynes, M., Dominguez, J., Hu, J. J., Mossazghi, N., Ebner, T. J. & Bangalore Kodandaramaiah, S., Jan 1 2018.

Research output: Contribution to conferencePaper

Prosthetics
Brain
Imaging techniques
8 Citations (Scopus)

CRISPR/Cas9 and TALENs generate heritable mutations for genes involved in small RNA processing of Glycine max and Medicago truncatula

Curtin, S. J., Xiong, Y., Michno, J. M., Campbell, B. W., Stec, A. O., Čermák, T., Starker, C., Voytas, D. F., Eamens, A. L. & Stupar, R. M., Jun 1 2018, In : Plant Biotechnology Journal. 16, 6, p. 1125-1137 13 p.

Research output: Contribution to journalArticle

Clustered Regularly Interspaced Short Palindromic Repeats
Medicago truncatula
Soybeans
Glycine max
RNA
1 Citation (Scopus)

Cross-feeding modulates antibiotic tolerance in bacterial communities

Adamowicz, E. M., Flynn, J., Hunter, R. C. & Harcombe, W., Nov 1 2018, In : ISME Journal. 12, 11, p. 2723-2735 13 p.

Research output: Contribution to journalArticle

Open Access
bacterial communities
antibiotics
tolerance
Ampicillin
ampicillin

Defence responses in the xylem of Ulmus americana cultivars after inoculation with Ophiostoma novo-ulmi

Beier, G. L. & Blanchette, R. A., Dec 1 2018, In : Forest Pathology. 48, 6, e12453.

Research output: Contribution to journalArticle

Ulmus americana
xylem
inoculation
cultivar
cultivars
6 Citations (Scopus)

Engineering Reversible Cell-Cell Interactions with Lipid Anchored Prosthetic Receptors

Csizmar, C. M., Petersburg, J. R., Hendricks, A., Stern, L. A., Hackel, B. J. & Wagner, C. R., Apr 18 2018, In : Bioconjugate Chemistry. 29, 4, p. 1291-1301 11 p.

Research output: Contribution to journalArticle

Nanorings
Cell Engineering
Cell membranes
Prosthetics
Cell Communication
2 Citations (Scopus)

Enhanced biodegradation of atrazine by bacteria encapsulated in organically modified silica gels

Benson, J. J., Sakkos, J. K., Radian, A., Wackett, L. P. & Aksan, A., Jan 15 2018, In : Journal of Colloid And Interface Science. 510, p. 57-68 12 p.

Research output: Contribution to journalArticle

Atrazine
Herbicides
Silica Gel
Silica gel
Biodegradation

Involvement of the VGF-derived peptide TLQP-62 in nerve injury-induced hypersensitivity and spinal neuroplasticity

Skorput, A. G. J., Zhang, X., Waataja, J. J., Peterson, C. D., Riedl, M. S., Kitto, K. F., Truong, H., Huffman, C., Salton, S. R., Fairbanks, C. A., Honda, C. N. & Vulchanova, L., Sep 1 2018, In : Pain. 159, 9, p. 1802-1813 12 p.

Research output: Contribution to journalArticle

Neuronal Plasticity
Hypersensitivity
Neuralgia
Peptides
Spinal Cord

Microtubule-Actomyosin Mechanical Cooperation during Contact Guidance Sensing

Tabdanov, E. D., Puram, V., Zhovmer, A. & Provenzano, P., Oct 9 2018, In : Cell Reports. 25, 2, p. 328-338.e6

Research output: Contribution to journalArticle

Actomyosin
Microtubules
Tumors
Cells
Stiffness
7 Citations (Scopus)

Muscle Satellite Cell Cross-Talk with a Vascular Niche Maintains Quiescence via VEGF and Notch Signaling

Verma, M., Asakura, Y., Murakonda, B. S. R., Pengo, T., Latroche, C., Chazaud, B., McLoon, L. K. & Asakura, A., Oct 4 2018, In : Cell Stem Cell. 23, 4, p. 530-543.e9

Research output: Contribution to journalArticle

Muscle Cells
Vascular Endothelial Growth Factor A
Blood Vessels
Endothelial Cells
Muscles
6 Citations (Scopus)
Mesenchymal Stromal Cells
Paclitaxel
Pharmaceutical Preparations
Neoplasms
Nanoparticles
10 Citations (Scopus)

Polymeric nanoparticles encapsulating novel TLR7/8 agonists as immunostimulatory adjuvants for enhanced cancer immunotherapy

Kim, H., Niu, L., Larson, P., Kucaba, T. A., Murphy, K. A., James, B. R., Ferguson, D. M., Griffith, T. S. & Panyam, J., May 1 2018, In : Biomaterials. 164, p. 38-53 16 p.

Research output: Contribution to journalArticle

T-cells
Immunotherapy
Nanoparticles
Vaccines
Tumors

Principles of computer numerical control applied to small research animal surgical procedures

Rynes, M., Ghanbari, L., Hu, J. J., Schulman, D. S., Johnson, G., Laroque, M. & Bangalore Kodandaramaiah, S., Jan 1 2018.

Research output: Contribution to conferencePaper

Animals
Tissue
Milling machines
Drilling
Machining

Robotic platform for the delivery of gene products into single cells in organotypic slices of the developing mouse brain

Shull, G., Haffner, C., Huttner, W., Taverna, E. & Bangalore Kodandaramaiah, S., Jan 1 2018.

Research output: Contribution to conferencePaper

Brain
Robotics
Genes
Dyes
Computer vision

Safety and Efficacy of Rose Bengal Derivatives for Glial Scar Ablation in Chronic Spinal Cord Injury

Patil, N., Truong, V., Holmberg, M. H., Lavoie, N. S., McCoy, M. R., Dutton, J. R., Holmberg, E. G. & Parr, A. M., Aug 1 2018, In : Journal of Neurotrauma. 35, 15, p. 1745-1754 10 p.

Research output: Contribution to journalArticle

Rose Bengal
Spinal Cord Injuries
Neuroglia
Cicatrix
Safety
13 Citations (Scopus)

Self-Assembling Protein Scaffold System for Easy in Vitro Coimmobilization of Biocatalytic Cascade Enzymes

Zhang, G., Quin, M. B. & Schmidt-Dannert, C., Jun 1 2018, In : ACS Catalysis. 8, 6, p. 5611-5620 10 p.

Research output: Contribution to journalArticle

Scaffolds (biology)
Scaffolds
Enzymes
Proteins
Enzyme immobilization
Open Access
rho-Associated Kinases
Albuminuria
Morphogenesis
Allografts
Fibrosis
1 Citation (Scopus)
Toll-Like Receptor 6
Toll-Like Receptor 2
Immunization
Vaccines
Fibroblasts
2017
1 Citation (Scopus)

Adsorption and Biodegradation of Aromatic Chemicals by Bacteria Encapsulated in a Hydrophobic Silica Gel

Sakkos, J. K., Mutlu, B. R., Wackett, L. P. & Aksan, A., Aug 16 2017, In : ACS Applied Materials and Interfaces. 9, 32, p. 26848-26858 11 p.

Research output: Contribution to journalArticle

Silica Gel
Silica gel
Biodegradation
Silicon Dioxide
Bacteria
4 Citations (Scopus)

An Innovative High-Throughput Screening Approach for Discovery of Small Molecules That Inhibit TNF Receptors

Lo, C. H., Vunnam, N., Lewis, A. K., Chiu, T. L., Brummel, B. E., Schaaf, T. M., Grant, B. D., Bawaskar, P., Thomas, D. D. & Sachs, J. N., Sep 1 2017, In : SLAS Discovery. 22, 8, p. 950-961 12 p.

Research output: Contribution to journalArticle

Tumor Necrosis Factor Receptors
Screening
triclabendazole
Throughput
Ligands
9 Citations (Scopus)
Axonal Transport
Secretory Vesicles
Phosphoric Monoester Hydrolases
Phosphotransferases
Transcription Factor AP-1
31 Citations (Scopus)

ATGL Promotes Autophagy/Lipophagy via SIRT1 to Control Hepatic Lipid Droplet Catabolism

Sathyanarayan, A., Mashek, M. T. & Mashek, D., Apr 4 2017, In : Cell Reports. 19, 1, p. 1-9 9 p.

Research output: Contribution to journalArticle

Sirtuin 1
Autophagy
Lipase
Lipids
Liver
16 Citations (Scopus)

Gold Nanorod Induced Warming of Embryos from the Cryogenic State Enhances Viability

Khosla, K., Wang, Y., Hagedorn, M., Qin, Z. & Bischof, J. C., Aug 22 2017, In : ACS Nano. 11, 8, p. 7869-7878 10 p.

Research output: Contribution to journalArticle

embryos
Nanorods
viability
Gold
Cryogenics
10 Citations (Scopus)

High-Throughput spectral and lifetime-based FRET screening in living cells to identify small-molecule effectors of SERCA

Schaaf, T. M., Peterson, K. C., Grant, B. D., Bawaskar, P., Yuen, S., Li, J., Muretta, J. M., Gillispie, G. D. & Thomas, D. D., Jan 1 2017, In : SLAS Discovery. 22, 3, p. 262-273 12 p.

Research output: Contribution to journalArticle

Fluorescence Resonance Energy Transfer
Calcium-Transporting ATPases
Endoplasmic Reticulum
Screening
Cells
6 Citations (Scopus)

Imaging Tunneling Membrane Tubes Elucidates Cell Communication in Tumors

Thayanithy, V., Desir, S., Desir, S., Gholami, S., Romin, Y., Fujisawa, S., Manova-Todorova, K., Steer, C. J., Subramanian, S., Fong, Y. & Moore, M. A. S., Oct 1 2017, In : Trends in Cancer. 3, 10, p. 678-685 8 p.

Research output: Contribution to journalReview article

Nanotubes
Cell Communication
Membranes
Neoplasms
Microscopy
4 Citations (Scopus)

Plasticity of signaling by spinal estrogen receptor α,κ-Opioid receptor, and metabotropic glutamate receptors over the rat reproductive cycle regulates spinal endomorphin 2 antinociception: Relevance of endogenous-biased agonism

Liu, N. J., Murugaiyan, V., Storman, E. M., Schnell, S. A., Kumar, A., Wessendorf, M. W. & Gintzler, A. R., Nov 15 2017, In : Journal of Neuroscience. 37, 46, p. 11181-11191 11 p.

Research output: Contribution to journalArticle

Metabotropic Glutamate Receptors
Opioid Receptors
Estrogen Receptors
Proestrus
Diestrus
2 Citations (Scopus)

Priming GPCR signaling through the synergistic effect of two G proteins

Gupte, T., Malik, R. U., Sommese, R. F., Ritt, M. & Sivaramakrishnan, S., Apr 4 2017, In : Proceedings of the National Academy of Sciences of the United States of America. 114, 14, p. 3756-3761 6 p.

Research output: Contribution to journalArticle

G-Protein-Coupled Receptors
GTP-Binding Proteins
Adrenergic Receptors
Gq-G11 GTP-Binding Protein alpha Subunits
Allosteric Site
2 Citations (Scopus)

Role of clathrin in dense core vesicle biogenesis

Sahu, B. S., Manna, P. T., Edgar, J. R., Antrobus, R., Mahata, S. K., Bartolomucci, A., Borner, G. H. H. & Robinson, M. S., Oct 1 2017, In : Molecular Biology of the Cell. 28, 20, p. 2676-2685 10 p.

Research output: Contribution to journalArticle

Clathrin
Secretory Vesicles
Proteins
PC12 Cells
Mass Spectrometry
6 Citations (Scopus)

Sequence-Directed Covalent Protein-DNA Linkages in a Single Step Using HUH-Tags

Lovendahl, K. N., Hayward, A. N. & Gordon, W. R., May 24 2017, In : Journal of the American Chemical Society. 139, 20, p. 7030-7035 6 p.

Research output: Contribution to journalArticle

DNA
Fusion reactions
Proteins
Endonucleases
Single-Stranded DNA
3 Citations (Scopus)

Stochasticity in the enterococcal sex pheromone response revealed by quantitative analysis of transcription in single cells

Breuer, R. J., Bandyopadhyay, A., O’Brien, S. A., Barnes, A. M. T., Hunter, R. C., Hu, W-S. & Dunny, G. M., Jul 1 2017, In : PLoS Genetics. 13, 7, e1006878.

Research output: Contribution to journalArticle

Open Access
Sex Attractants
sex pheromone
Pheromones
sex pheromones
stochasticity
3 Citations (Scopus)

The role of regulatory domains in maintaining autoinhibition in the multidomain kinase PKCα

Sommese, R., Ritt, M., Swanson, C. J. & Sivaramakrishnan, S., Feb 17 2017, In : Journal of Biological Chemistry. 292, 7, p. 2873-2880 8 p.

Research output: Contribution to journalArticle

Protein Kinase C
Catalytic Domain
Nucleotides
Chemical activation
Membranes
2016
2 Citations (Scopus)
Biofiltration
biofiltration
Biofilms
bait
biofilm
17 Citations (Scopus)

Cannabinoid receptor-specific mechanisms to alleviate pain in sickle cell anemia via inhibition of mast cell activation and neurogenic inflammation

Vincent, L., Vang, D., Nguyen, J., Benson, B., Lei, J. & Gupta, K., Apr 30 2016, In : Haematologica. 101, 5, p. 566-577 12 p.

Research output: Contribution to journalArticle

Neurogenic Inflammation
Cannabinoid Receptors
Sickle Cell Anemia
Mast Cells
Cannabinoids