Research Output 1968 2019

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2019
2 Citations (Scopus)

Biotic interactions contribute to the geographic range limit of an annual plant: Herbivory and phenology mediate fitness beyond a range margin

Benning, J. W., Eckhart, V. M., Geber, M. A. & Moeller, D., Jun 1 2019, In : American Naturalist. 193, 6, p. 786-797 12 p.

Research output: Contribution to journalArticle

annual plant
herbivory
phenology
fitness
herbivores
3 Citations (Scopus)

BRASSINOSTEROID-SIGNALING KINASE 3, a plasma membrane-associated scaffold protein involved in early brassinosteroid signaling

Ren, H., Willige, B. C., Jaillais, Y., Geng, S., Park, M., Gray, W. M. & Chory, J., Jan 1 2019, In : PLoS genetics. 15, 1, e1007904.

Research output: Contribution to journalArticle

Brassinosteroids
scaffolding proteins
brassinosteroids
Blood Proteins
Membrane Proteins

Carbohydrate metabolism and signaling in squash nectaries and nectar throughout floral maturation

Solhaug, E. M., Johnson, E. & Carter, C. J., Aug 1 2019, In : Plant physiology. 180, 4, p. 1930-1946 17 p.

Research output: Contribution to journalArticle

Open Access
Plant Nectar
Cucurbita
nectar secretion
nectaries
squashes
1 Citation (Scopus)

Chromosome rearrangements shape the diversification of secondary metabolism in the cyclosporin producing fungus Tolypocladium inflatum

Olarte, R., Menke, J. R., Zhang, Y., Sullivan, S., Slot, J. C., Huang, Y., Badalamenti, J., Quandt, A. C., Spatafora, J. W. & Bushley, K. E., Feb 7 2019, In : BMC Genomics. 20, 1, 120.

Research output: Contribution to journalArticle

Secondary Metabolism
Multigene Family
Cyclosporine
Fungi
Chromosomes

Classifying cold-stress responses of inbred maize seedlings using RGB imaging

Enders, T., St. Dennis, S., Oakland, J., Callen, S. T., Gehan, M. A., Miller, N. D., Spalding, E. P., Springer, N. M. & Hirsch, C. D., Jan 1 2019, In : Plant Direct. 3, 1, e00104.

Research output: Contribution to journalArticle

Open Access
Cold-Shock Response
Seedlings
Zea mays
genotype
cold stress

Climate change is predicted to disrupt patterns of local adaptation in wild and cultivated maize

Aguirre-Liguori, J. A., Ramírez-Barahona, S., Tiffin, P. L. & Eguiarte, L. E., Jul 10 2019, In : Proceedings of the Royal Society B: Biological Sciences. 286, 1906

Research output: Contribution to journalArticle

Climate Change
local adaptation
Climate change
Zea mays
maize

Complete genome sequence of a previously undescribed badnavirus occurring in Polyscias fruticosa L. (Ming aralia)

Alvarez-Quinto, R. A., Lockhart, B. E. & Olszewski, N. E., Sep 1 2019, In : Archives of Virology. 164, 9, p. 2371-2374 4 p.

Research output: Contribution to journalArticle

Badnavirus
Aralia
Araliaceae
Ribonuclease H
Genome

Culturable mycobiome of soya bean cyst nematode (Heterodera glycines) cysts from a long-term soya bean-corn rotation system is dominated by Fusarium

Haarith, D., Hu, W., Kim, D. G., Showalter, D. N., Chen, S. & Bushley, K. E., Dec 2019, In : Fungal Ecology. 42, 100857.

Research output: Contribution to journalArticle

Open Access
Heterodera glycines
cyst nematodes
cyst
Fusarium
nematode
44 Citations (Scopus)

Cytosine, but not adenine, base editors induce genome-wide off-target mutations in rice

Jin, S., Zong, Y., Gao, Q., Zhu, Z., Wang, Y., Qin, P., Liang, C., Wang, D., Qiu, J. L., Zhang, F. & Gao, C., Jan 1 2019, In : Science. 364, 6437, p. 292-295 4 p.

Research output: Contribution to journalArticle

Cytosine
Adenine
Genome
Mutation
Nucleotides

Determinants of Piper (Piperaceae) climber composition in a lowland tropical rainforest in New Guinea

Lisner, A., Kaina, G., Sisol, M., Fibich, P., Novotný, V., Weiblen, G. D. & Lepš, J., Jan 1 2019, In : Folia Geobotanica.

Research output: Contribution to journalArticle

Piperaceae
Piper
New Guinea
tropical rain forests
rainforest
plant response
climate
rain
rainfall
fitness

Dynamic Patterns of Gene Expression Additivity and Regulatory Variation throughout Maize Development

Zhou, P., Hirsch, C. N., Briggs, S. P. & Springer, N. M., Mar 4 2019, In : Molecular Plant. 12, 3, p. 410-425 16 p.

Research output: Contribution to journalArticle

Zea mays
Gene Expression
gene expression
corn
Genes

Environmental Association Identifies Candidates for Tolerance to Low Temperature and Drought

Lei, L., Poets, A. M., Liu, C., Wyant, S. R., Hoffman, P. J., Carter, C. K., Shaw, B. G., Li, X., Muehlbauer, G. J., Katagiri, F. & Morrell, P. L., Oct 7 2019, In : G3 (Bethesda, Md.). 9, 10, p. 3423-3438 16 p.

Research output: Contribution to journalArticle

Open Access
Droughts
Hordeum
Temperature
Single Nucleotide Polymorphism
Linkage Disequilibrium
4 Citations (Scopus)

Evolution of Portulacineae Marked by Gene Tree Conflict and Gene Family Expansion Associated with Adaptation to Harsh Environments

Wang, N., Yang, Y., Moore, M. J., Brockington, S. F., Walker, J. F., Brown, J. W., Liang, B., Feng, T., Edwards, C., Mikenas, J., Olivieri, J., Hutchison, V., Timoneda, A., Stoughton, T., Puente, R., Majure, L. C., Eggli, U. & Smith, S. A., Jan 1 2019, In : Molecular biology and evolution. 36, 1, p. 112-126 15 p.

Research output: Contribution to journalArticle

Family Conflict
Cactaceae
Didiereaceae
gene
Gene Duplication

Evolution of substrate-specific gene expression and RNA editing in brown rot wood-decaying fungi

Wu, B., Gaskell, J., Zhang, J., Toapanta, C., Ahrendt, S., Grigoriev, I. V., Blanchette, R. A., Schilling, J. S., Master, E., Cullen, D. & Hibbett, D. S., Jun 1 2019, In : ISME Journal. 13, 6, p. 1391-1403 13 p.

Research output: Contribution to journalArticle

RNA Editing
RNA editing
decay fungi
gene expression
RNA

FAD2 Gene Radiation and Positive Selection Contributed to Polyacetylene Metabolism Evolution in Campanulids

Feng, T., Yang, Y., Busta, L., Cahoon, E. B., Wang, H. & Lü, S., Oct 1 2019, In : Plant physiology. 181, 2, p. 714-728 15 p.

Research output: Contribution to journalArticle

Open Access
Polyacetylenes
Fatty Acid Desaturases
polyacetylenes
stearoyl-CoA desaturase
Radiation

Faster speciation of fig-wasps than their host figs leads to decoupled speciation dynamics: Snapshots across the speciation continuum

Souto-Vilarós, D., Machac, A., Michalek, J., Darwell, C. T., Sisol, M., Kuyaiva, T., Isua, B., Weiblen, G. D., Novotny, V. & Segar, S. T., Sep 1 2019, In : Molecular ecology. 28, 17, p. 3958-3976 19 p.

Research output: Contribution to journalArticle

Agaonidae
Ficus
Wasps
Genetic Structures
figs
Decay (organic)
Fungi
Fluorescence In Situ Hybridization
Gene expression
gene expression
Open Access
Thlaspi arvense
domestication
Thlaspi
genetic variation
single nucleotide polymorphism
2 Citations (Scopus)

Genome-based estimates of fungal rDNA copy number variation across phylogenetic scales and ecological lifestyles

Lofgren, L. A., Uehling, J. K., Branco, S., Bruns, T. D., Martin, F. & Kennedy, P. G., Feb 1 2019, In : Molecular ecology. 28, 4, p. 721-730 10 p.

Research output: Contribution to journalArticle

Fungal DNA
DNA Copy Number Variations
Ribosomal DNA
lifestyle
ribosomal DNA

Genome-wide nucleotide patterns and potential mechanisms of genome divergence following domestication in maize and soybean

Wang, J., Li, X., Do Kim, K., Scanlon, M. J., Jackson, S. A., Springer, N. M. & Yu, J., Apr 25 2019, In : Genome biology. 20, 1, 74.

Research output: Contribution to journalArticle

Open Access
domestication
Soybeans
Zea mays
soybean
Nucleotides

Genomic Dissection of Nonhost Resistance to Wheat Stem Rust in Brachypodium distachyon

Della Coletta, R., Hirsch, C. N., Rouse, M. N., Lorenz, A. J. & Garvin, D. F., Apr 1 2019, In : Molecular Plant-Microbe Interactions. 32, 4, p. 392-400 9 p.

Research output: Contribution to journalArticle

Brachypodium
Brachypodium distachyon
stem rust
Triticum
Dissection
2 Citations (Scopus)

High specialization and limited structural change in plant-herbivore networks along a successional chronosequence in tropical montane forest

Redmond, C. M., Auga, J., Gewa, B., Segar, S. T., Miller, S. E., Molem, K., Weiblen, G. D., Butterill, P. T., Maiyah, G., Hood, A. S. C., Volf, M., Jorge, L. R., Basset, Y. & Novotný, V., Jan 1 2019, In : Ecography. 42, 1, p. 162-172 11 p.

Research output: Contribution to journalArticle

chronosequences
chronosequence
montane forest
montane forests
structural change

Hybrid decay: A transgenerational epigenetic decline in vigor and viability triggered in backcross populations of teosinte with maize

Xue, W., Anderson, S. N., Wang, X., Yang, L., Crisp, P. A., Li, Q., Noshay, J., Albert, P. S., Birchler, J. A., Bilinski, P., Stitzer, M. C., Ross-Ibarra, J., Flint-Garcia, S., Chen, X., Springer, N. M. & Doebley, J. F., Jan 1 2019, In : Genetics. 213, 1, p. 143-160 18 p.

Research output: Contribution to journalArticle

Open Access
Epigenomics
Zea mays
tetrachloroisophthalonitrile
Population
DNA Transposable Elements
1 Citation (Scopus)
Open Access
oasis
Archean
photosynthesis
thermal spring
oxygen

Idea factory: The maize genomes to fields initiative

Lawrence-Dill, C. J., Schnable, P. S. & Springer, N. M., Jul 1 2019, In : Crop Science. 59, 4, p. 1406-1410 5 p.

Research output: Contribution to journalArticle

Open Access
research support
research and development
factories
education
researchers

Identification of the expressome by machine learning on omics data

Sartor, R. C., Noshay, J., Springer, N. M. & Briggs, S. P., Sep 3 2019, In : Proceedings of the National Academy of Sciences of the United States of America. 116, 36, p. 18119-18125 7 p.

Research output: Contribution to journalArticle

Open Access
Genes
Genome
DNA Methylation
Methylation
Histone Code
1 Citation (Scopus)

Legacy of prior host and soil selection on rhizobial fitness in planta

Burghardt, L. T., Epstein, B. & Tiffin, P. L., Sep 1 2019, In : Evolution. 73, 9, p. 2013-2023 11 p.

Research output: Contribution to journalArticle

Plantae
fitness
Soil
soil
Population
1 Citation (Scopus)

Maize Carbohydrate Partitioning Defective33 Encodes an MCTP Protein and Functions in Sucrose Export from Leaves

Tran, T. M., McCubbin, T. J., Bihmidine, S., Julius, B. T., Baker, R. F., Schauflinger, M., Weil, C., Springer, N. M., Chomet, P., Wagner, R., Woessner, J., Grote, K., Peevers, J., Slewinski, T. L. & Braun, D. M., Sep 2 2019, In : Molecular Plant. 12, 9, p. 1278-1293 16 p.

Research output: Contribution to journalArticle

Plasmodesmata
Zea mays
Sucrose
Carbohydrates
sucrose

Maladaptation beyond a geographic range limit driven by antagonistic and mutualistic biotic interactions across an abiotic gradient

Benning, J. W. & Moeller, D., Oct 1 2019, In : Evolution. 73, 10, p. 2044-2059 16 p.

Research output: Contribution to journalArticle

Herbivory
fitness
herbivores
herbivory
Clarkia
1 Citation (Scopus)

Mating system variation in hybrid zones: facilitation, barriers and asymmetries to gene flow

Pickup, M., Brandvain, Y., Fraïsse, C., Yakimowski, S., Barton, N. H., Dixit, T., Lexer, C., Cereghetti, E. & Field, D. L., Nov 1 2019, In : New Phytologist. 224, 3, p. 1035-1047 13 p.

Research output: Contribution to journalArticle

Open Access
Gene Flow
mating systems
gene flow
hybridization
Reproductive Isolation

Matrotrophic viviparity constrains microbiome acquisition during gestation in a live-bearing cockroach, Diploptera punctata

Jennings, E. C., Korthauer, M. W., Hamilton, T. & Benoit, J. B., Sep 1 2019, In : Ecology and Evolution. 9, 18, p. 10601-10614 14 p.

Research output: Contribution to journalArticle

Open Access
Diploptera punctata
viviparity
cockroach
vivipary (animals)
Blattodea
6 Citations (Scopus)

Molecular tools enabling pennycress (Thlaspi arvense) as a model plant and oilseed cash cover crop

McGinn, M., Phippen, W. B., Chopra, R., Bansal, S., Jarvis, B. A., Phippen, M. E., Dorn, K. M., Esfahanian, M., Nazarenus, T. J., Cahoon, E. B., Durrett, T. P., Marks, M. D. & Sedbrook, J. C., Apr 1 2019, In : Plant Biotechnology Journal. 17, 4, p. 776-788 13 p.

Research output: Contribution to journalArticle

Thlaspi
Thlaspi arvense
cash crops
oilseeds
cover crops

Monitoring the interplay between transposable element families and DNA methylation in maize

Noshay, J. M., Anderson, S. N., Zhou, P., Ji, L., Ricci, W., Lu, Z., Stitzer, M. C., Crisp, P. A., Hirsch, C. N., Zhang, X., Schmitz, R. J. & Springer, N. M., Sep 1 2019, In : PLoS genetics. 15, 9, p. e1008291

Research output: Contribution to journalArticle

Open Access
DNA Transposable Elements
methylation
DNA methylation
DNA Methylation
transposons

Mutation of a Conserved Motif of PP2C.D Phosphatases Confers SAUR Immunity and Constitutive Activity

Wong, J. H., Spartz, A. K., Park, M., Du, M. & Gray, W. M., Sep 1 2019, In : Plant physiology. 181, 1, p. 353-366 14 p.

Research output: Contribution to journalArticle

Open Access
Proton-Translocating ATPases
Phosphoric Monoester Hydrolases
Immunity
immunity
Cell Membrane
Open Access
Biodiversity
Fungi
Soil
fungus
biodiversity

Patterns of nitrogen-fixing tree abundance in forests across Asia and America

Menge, D. N. L., Chisholm, R. A., Davies, S. J., Abu Salim, K., Allen, D., Alvarez, M., Bourg, N., Brockelman, W. Y., Bunyavejchewin, S., Butt, N., Cao, M., Chanthorn, W., Chao, W. C., Clay, K., Condit, R., Cordell, S., da Silva, J. B., Dattaraja, H. S., de Andrade, A. C. S., de Oliveira, A. A. & 65 others, den Ouden, J., Drescher, M., Fletcher, C., Giardina, C. P., Savitri Gunatilleke, C. V., Gunatilleke, I. A. U. N., Hau, B. C. H., He, F., Howe, R., Hsieh, C. F., Hubbell, S. P., Inman-Narahari, F. M., Jansen, P. A., Johnson, D. J., Kong, L. S., Král, K., Ku, C. C., Lai, J., Larson, A. J., Li, X., Li, Y., Lin, L., Lin, Y. C., Liu, S., Lum, S. K. Y., Lutz, J. A., Ma, K., Malhi, Y., McMahon, S., McShea, W., Mi, X., Morecroft, M., Myers, J. A., Nathalang, A., Novotny, V., Ong, P., Orwig, D. A., Ostertag, R., Parker, G., Phillips, R. P., Abd. Rahman, K., Sack, L., Sang, W., Shen, G., Shringi, A., Shue, J., Su, S. H., Sukumar, R., Sun, I. F., Suresh, H. S., Tan, S., Thomas, S. C., Toko, P. S., Valencia, R., Vallejo, M. I., Vicentini, A., Vrška, T., Wang, B., Wang, X., Weiblen, G. D., Wolf, A., Xu, H., Yap, S., Zhu, L. & Fung, T., Nov 1 2019, In : Journal of Ecology. 107, 6, p. 2598-2610 13 p.

Research output: Contribution to journalArticle

nitrogen-fixing trees
nitrogen
tropics
Asia
stems
3 Citations (Scopus)

Plant-mediated partner discrimination in ectomycorrhizal mutualisms

Bogar, L., Peay, K., Kornfeld, A., Huggins, J., Hortal, S., Anderson, I. & Kennedy, P. G., Mar 1 2019, In : Mycorrhiza. 29, 2, p. 97-111 15 p.

Research output: Contribution to journalArticle

fungus
Fungi
fungi
Suillus
Seedlings

PlantSimLab - A modeling and simulation web tool for plant biologists

Ha, S., Dimitrova, E., Hoops, S., Altarawy, D., Ansariola, M., Deb, D., Glazebrook, J., Hillmer, R., Shahin, H., Katagiri, F., McDowell, J., Megraw, M., Setubal, J., Tyler, B. M. & Laubenbacher, R., Oct 21 2019, In : BMC bioinformatics. 20, 1, 508.

Research output: Contribution to journalArticle

Open Access
Expertise
Modeling and Simulation
Theoretical Models
Software
Mathematical Modeling
1 Citation (Scopus)

Population Genetics of Calotropis gigantea, a Medicinal and Fiber Resource Plant, as Inferred from Microsatellite Marker Variation in two Native Countries

Islam, M. R., Li, Z. Z., Gichira, A. W., Alam, M. N., Fu, P. C., Hu, G. W., Wang, Q. F. & Chen, L., Aug 1 2019, In : Biochemical Genetics. 57, 4, p. 522-539 18 p.

Research output: Contribution to journalArticle

Calotropis gigantea
Calotropis
Population Genetics
Microsatellite Repeats
population genetics
Open Access
Hot springs
Hot Springs
biosphere
early Earth
hot springs
1 Citation (Scopus)

Reference genes for accurate normalization of gene expression in wood-decomposing fungi

Zhang, J., Mitchell, H. D., Markillie, L. M., Gaffrey, M. J., Orr, G. & Schilling, J. S., Feb 1 2019, In : Fungal Genetics and Biology. 123, p. 33-40 8 p.

Research output: Contribution to journalArticle

Fungi
Gene Expression
Genes
Carbon
Fungal Genes

Resistance of European ash ( Fraxinus excelsior ) saplings to larval feeding by the emerald ash borer ( Agrilus planipennis )

Showalter, D., Saville, R. J., Orton, E. S., Buggs, R. J. A., Bonello, P. & Brown, J. K. M., Nov 13 2019, In : Plants People Planet.

Research output: Contribution to journalArticle

Open Access

Seed predation increases from the Arctic to the Equator and from high to low elevations

Hargreaves, A. L., Suárez, E., Mehltreter, K., Myers-Smith, I., Vanderplank, S. E., Slinn, H. L., Vargas-Rodriguez, Y. L., Haeussler, S., David, S., Muñoz, J., Almazán-Núñez, R. C., Loughnan, D., Benning, J. W., Moeller, D., Brodie, J. F., Thomas, H. J. D. & Morales, P. A., Feb 20 2019, In : Science advances. 5, 2, eaau4403.

Research output: Contribution to journalArticle

Open Access
equators
biological diversity
seeds
productivity
sea level
3 Citations (Scopus)

Sex-biased gene expression in flowers, but not leaves, reveals secondary sexual dimorphism in Populus balsamifera

Sanderson, B. J., Wang, L., Tiffin, P. L., Wu, Z. & Olson, M. S., Jan 1 2019, In : New Phytologist. 221, 1, p. 527-539 13 p.

Research output: Contribution to journalArticle

Populus balsamifera
Populus
Sex Characteristics
sexual dimorphism
flowers

SHB1 and CCA1 interaction desensitizes light responses and enhances thermomorphogenesis

Sun, Q., Wang, S., Xu, G., Kang, X., Zhang, M. & Ni, M., Dec 1 2019, In : Nature communications. 10, 1, 3110.

Research output: Contribution to journalArticle

Open Access
Light
interactions
helices
Temperature
actuators
3 Citations (Scopus)

Snow algae drive productivity and weathering at volcanic rock-hosted glaciers

Havig, J. R. & Hamilton, T., Feb 15 2019, In : Geochimica et Cosmochimica Acta. 247, p. 220-242 23 p.

Research output: Contribution to journalArticle

Volcanic rocks
Glaciers
rock glacier
Algae
Weathering
2 Citations (Scopus)
Open Access
Amaranthus
Climate
Spatial Analysis
Introduced Species
Climate Change
5 Citations (Scopus)

The adaptable use of Brassica NIRS calibration equations to identify pennycress variants to facilitate the rapid domestication of a new winter oilseed crop

Chopra, R., Folstad, N., Lyons, J., Ulmasov, T., Gallaher, C., Sullivan, L., Mcgovern, A., Mitacek, R., Frels, K., Altendorf, K., Killam, A., Ismail, B., Anderson, J. A., Wyse, D. L. & Marks, M. D., Feb 1 2019, In : Industrial Crops and Products. 128, p. 55-61

Research output: Contribution to journalArticle

The Antarctic mite, Alaskozetes antarcticus, shares bacterial microbiome community membership but not abundance between adults and tritonymphs

Holmes, C. J., Jennings, E. C., Gantz, J. D., Spacht, D., Spangler, A. A., Denlinger, D. L., Lee, R. E., Hamilton, T. L. & Benoit, J. B., Nov 1 2019, In : Polar Biology. 42, 11, p. 2075-2085 11 p.

Research output: Contribution to journalArticle

Mites
Microbiota
nymphs
mites
Cytophagaceae