Research Output 1968 2019

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2019

Measuring pectin properties to track cell wall alterations during plant–pathogen interactions

Bethke, G. & Glazebrook, J., Jan 1 2019, Methods in Molecular Biology. Humana Press Inc., p. 55-60 6 p. (Methods in Molecular Biology; vol. 1991).

Research output: Chapter in Book/Report/Conference proceedingChapter

Cell Wall
Plant Cells
Pectins
pectin
Plant Immunity
2018
3 Citations (Scopus)

Detection of DNA methylation by whole-genome bisulfite sequencing

Li, Q., Hermanson, P. J. & Springer, N. M., Jan 1 2018, Methods in Molecular Biology. Humana Press Inc., p. 185-196 12 p. (Methods in Molecular Biology; vol. 1676).

Research output: Chapter in Book/Report/Conference proceedingChapter

DNA Methylation
Genome
Gene Expression Regulation
Hordeum
Zea mays

Measurement of the caspase-1-like activity of vacuolar processing enzyme in plants

Hatsugai, N. & Hara-Nishimura, I., Jan 1 2018, Methods in Molecular Biology. Humana Press Inc., p. 163-171 9 p. (Methods in Molecular Biology; vol. 1743).

Research output: Chapter in Book/Report/Conference proceedingChapter

Caspase 1
Caspases
Aspartic Acid
Cell Death
Enzymes
2017
1 Citation (Scopus)

Isolation of rice sperm cells for transcriptional profiling

Russell, S. D., Jones, D. S., Anderson, S., Wang, X., Sundaresan, V. & Gou, X., Jan 1 2017, Methods in Molecular Biology. Humana Press Inc., p. 211-219 9 p. (Methods in Molecular Biology; vol. 1669).

Research output: Chapter in Book/Report/Conference proceedingChapter

Pollen
Spermatozoa
RNA
Plant Cells
Microarray Analysis
1 Citation (Scopus)

Network reconstitution for quantitative subnetwork interaction analysis

Katagiri, F., Jan 1 2017, Methods in Molecular Biology. Humana Press Inc., p. 223-231 9 p. (Methods in Molecular Biology; vol. 1578).

Research output: Chapter in Book/Report/Conference proceedingChapter

Systems Biology
Genotype
Phenotype
1 Citation (Scopus)

Protocol for biocontrol of soybean cyst nematode with root endophytic fungi

Bajaj, R., Chen, S., Hu, W., Huang, Y., Prasad, R., Kumar, V., Tuteja, N., Varma, A. & Bushley, K. E., Apr 21 2017, Modern Tools and Techniques to Understand Microbes. Springer International Publishing, p. 401-412 12 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Biocontrol
Heterodera glycines
Fungi
Soybeans
Cysts
1 Citation (Scopus)

The role of arbuscular mycorrhizal fungi and the mycorrhizal-like fungus piriformospora indica in biocontrol of plant parasitic nematodes

Bajaj, R., Prasad, R., Varma, A. & Bushley, K. E., Aug 2 2017, Mycorrhiza - Eco-Physiology, Secondary Metabolites, Nanomaterials: Fourth Edition. Springer International Publishing, p. 43-56 14 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Biocontrol
parasitic plant
plant parasitic nematodes
Fungi
symbionts
2016
4 Citations (Scopus)

Mycorrhizal Interactions With Saprotrophs and Impact on Soil Carbon Storage

Verbruggen, E., Pena, R., Fernandez, C. W. & Soong, J. L., Nov 22 2016, Mycorrhizal Mediation of Soil: Fertility, Structure, and Carbon Storage. Elsevier Inc., p. 441-460 20 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

soil carbon
carbon sequestration
mycorrhizal fungi
Fungi
Soil
2015
3 Citations (Scopus)

Advances in new technology for targeted modifi cation of plant genomes

Zhang, F., Thomson, J. G. & Puchta, H., Jan 1 2015, Advances in New Technology for Targeted Modification of Plant Genomes. Springer New York, p. 1-166 166 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Plant Genome
genetic engineering
Cations
cations
Genetic Engineering
87 Citations (Scopus)

Auxin activity: Past, present, and future

Enders, T. A. & Strader, L. C., 2015, American Journal of Botany. Botanical Society of America Inc., p. 180-196 17 p. (American Journal of Botany; vol. 102).

Research output: Chapter in Book/Report/Conference proceedingChapter

Indoleacetic Acids
Growth Substances
Plant Growth Regulators
Growth
Botany
1 Citation (Scopus)

Toward network biology in E. Coli cell

Mori, H., Takeuchi, R., Otsuka, Y., Bowden, S., Yokoyama, K., Muto, A., Libourel, I. & Wanner, B. L., Jan 1 2015, Advances in Experimental Medicine and Biology. Springer New York LLC, p. 155-168 14 p. (Advances in Experimental Medicine and Biology; vol. 883).

Research output: Chapter in Book/Report/Conference proceedingChapter

Escherichia coli
Genes
Post and Core Technique
Genome
Molecular biology
2014

Arabidopsis Trichome Morphogenesis and the Role of Microtubules in Controlling Trichome Branch Formation

Marks, M. D., Dec 3 2014, Plant Cell Wall Patterning and Cell Shape. Wiley Blackwell, p. 269-285 17 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Trichomes
Morphogenesis
Arabidopsis
Microtubules
branches
7 Citations (Scopus)

Climate Change and Forest Herbs of Temperate Deciduous Forests

Bellemare, J. & Moeller, D., Apr 3 2014, The Herbaceous Layer in Forests of Eastern North America. Oxford University Press

Research output: Chapter in Book/Report/Conference proceedingChapter

Climate Change
temperate forests
deciduous forests
herbs
climate change
1 Citation (Scopus)

Grafting in Arabidopsis

Bainbridge, K., Bennett, T., Crisp, P., Leyser, O. & Turnbull, C., Jan 1 2014, Arabidopsis Protocols. Humana Press Inc., p. 155-163 9 p. (Methods in Molecular Biology; vol. 1062).

Research output: Chapter in Book/Report/Conference proceedingChapter

Disease Resistance
Arabidopsis
Genotype
Genes

Optimal design of isotope labeling experiments

Yang, H., Mandy, D. E. & Libourel, I. G. L., Jan 1 2014, Methods in Molecular Biology. Vol. 1083. p. 133-147 15 p. (Methods in Molecular Biology; vol. 1083).

Research output: Chapter in Book/Report/Conference proceedingChapter

Isotope Labeling
Isotopes
Research Design
Research Personnel
Costs and Cost Analysis

Optimal design of isotope labeling experiments

Yang, H., Mandy, D. E. & Libourel, I. G., Jan 1 2014, Plant Metabolism: Methods and Protocols. Humana Press Inc., p. 133-147 15 p. (Methods in Molecular Biology; vol. 1083).

Research output: Chapter in Book/Report/Conference proceedingChapter

Isotope Labeling
Isotopes
Research Design
Research Personnel
Costs and Cost Analysis
2013
169 Citations (Scopus)

Auxin biosynthesis and storage forms

Korasick, D. A., Enders, T. A. & Strader, L. C., 2013, Journal of Experimental Botany. p. 2541-2555 15 p. (Journal of Experimental Botany; vol. 64).

Research output: Chapter in Book/Report/Conference proceedingChapter

Indoleacetic Acids
Plant Development
Plant Growth Regulators
Growth and Development
Homeostasis
6 Citations (Scopus)

Gene Silencing in Medicago truncatula roots using RNAi

Floss, D. S., Schmitz, A. M., Starker, C., Stephen Gantt, J. & Harrison, M. J., Sep 20 2013, Legume Genomics: Methods and Protocols. Vol. 1069. p. 163-177 15 p. (Methods in Molecular Biology; vol. 1069).

Research output: Chapter in Book/Report/Conference proceedingChapter

Medicago truncatula
Gene Silencing
RNA Interference
Secondary Metabolism
Agrobacterium

Scale-up in a large introductory biology course

Brooker, R. J., Matthes, D. J., Wright, R., Wassenberg, D. M., Wick, S. M. & Couch, B., Jan 1 2013, Connected Science: Strategies for Integrative Learning in College. Indiana University Press, p. 89-99 11 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

biology
2011
3 Citations (Scopus)

Nitric oxide methods in seed biology

Bethke, P. C., Libourel, I. G. L., Vitecek, J. & Jones, R. L., Oct 24 2011, Seed Dormancy: Methods and Protocols. Kermode, A. R. (ed.). p. 385-400 16 p. (Methods in Molecular Biology; vol. 773).

Research output: Chapter in Book/Report/Conference proceedingChapter

Seeds
Nitric Oxide
Gases
Nitrogen Oxides
Nitric Oxide Donors
4 Citations (Scopus)

Spathaspora N.H: Nguyen, S.-O. Suh & M. Blackwell (2006)

Nguyen, N. H., Suh, S. O. & Blackwell, M., Dec 1 2011, The Yeasts. Elsevier, Vol. 2. p. 795-797 3 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Yeast
Yeasts
Asexual Reproduction
Biochemistry
Hyphae
2010
6 Citations (Scopus)

A transient assay for monitoring zinc finger nuclease activity at endogenous plant gene targets

Hoshaw, J. P., Unger-Wallace, E., Zhang, F. & Voytas, D. F., Dec 1 2010, Engineered Zinc Finger Proteins: Methods and Protocols. p. 299-313 15 p. (Methods in Molecular Biology; vol. 649).

Research output: Chapter in Book/Report/Conference proceedingChapter

Plant Genes
Zinc Fingers
DNA Restriction Enzymes
DNA Packaging
Gene Knockout Techniques
8 Citations (Scopus)

Auxin signal transduction

Hagen, G., Guilfoyle, T. J. & Gray, W. M., Jan 1 2010, Plant Hormones: Biosynthesis, Signal Transduction, Action!. Springer Netherlands, p. 282-307 26 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Indoleacetic Acids
signal transduction
auxins
Signal Transduction
hormones
2009
2 Citations (Scopus)

Epigenetic phenomena and epigenomics in maize

Hollick, J. B. & Springer, N. M., Jan 1 2009, Epigenomics. Springer Netherlands, p. 119-147 29 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Epigenomics
Zea mays
Genome
Research
DNA Transposable Elements
11 Citations (Scopus)

Flagellar Length Control

Lefebvre, P. A., Dec 1 2009, The Chlamydomonas Sourcebook 3-Vol set. Elsevier Inc., Vol. 3. p. 115-129 15 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Flagella
flagellum
Genes
genes
Chlamydomonas
6 Citations (Scopus)

Imprinting in maize

Springer, N. M. & Gutierrez-Marcos, J. F., Jan 1 2009, Handbook of Maize: Genetics and Genomics. Springer New York, p. 429-440 12 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

genomic imprinting
Polymorphism
Zea mays
Chromatin
Genes
4 Citations (Scopus)

The Plant Genome: Decoding the Transcriptional Hardwiring

Grotewold, E. & Springer, N. M., Aug 18 2009, Plant Systems Biology. Blackwell Publishing Ltd, Vol. 35. p. 196-228 33 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Plant Genome
DNA-Directed RNA Polymerases
DNA-directed RNA polymerase
Transcription Factors
transcription factors
2008
30 Citations (Scopus)

Cophylogeny of figs, pollinators, gallers, and parasitoids

Silvieus, S. I., Clement, W. L. & Weiblen, G. D., Jan 3 2008, Specialization, Speciation, and Radiation: The Evolutionary Biology of Herbivorous Insects. University of California Press, p. 225-239 15 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Ficus
figs
pollinators
parasitoids
2007
6 Citations (Scopus)

Auxin Metabolism and Signaling

Cohen, J. D. & Gray, W. M., Nov 12 2007, Plant Hormone Signaling. Wiley Blackwell, Vol. 24. p. 37-66 30 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Indoleacetic Acids
auxins
metabolism
42 Citations (Scopus)

Nitric Oxide in Seed Dormancy and Germination

Bethke, P. C., Libourel, I. G. & Jones, R. L., Nov 12 2007, Seed Development, Dormancy and Germination. Wiley, p. 153-175 23 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Plant Dormancy
metabolic inhibitors
Abscisic Acid
seed dormancy
Germination
2005

Downstream integrators of red, far-red, and blue light signaling for photomorphogenesis

Ni, M., Jan 1 2005, Light Sensing in Plants. Springer Japan, Vol. 9784431270928. p. 293-298 6 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

photomorphogenesis
far-red light
blue light
Gravitropism
gravitropism
2000
6 Citations (Scopus)

Trichome initiation in arabidopsis

Walker, A. R. & Marks, M. D., Dec 1 2000, Advances in Botanical Research. p. 219-236 18 p. (Advances in Botanical Research; vol. 31).

Research output: Chapter in Book/Report/Conference proceedingChapter

trichomes
Arabidopsis
1996
8 Citations (Scopus)

Schefflera ringspot virus, a widely distributed mealybug-transmitted badnavirus occurring in schefflera and aralia

Lockhart, B. E. & Olszewski, N. E., Dec 1 1996, Acta Horticulturae. p. 196-202 7 p. (Acta Horticulturae; vol. 432).

Research output: Chapter in Book/Report/Conference proceedingChapter

Schefflera ringspot virus
Badnavirus
Aralia
Schefflera
Pseudococcidae