Research Output 1973 2019

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2019

The galaxy platform for reproducible affinity proteomic mass spectrometry data analysis

Stewart, P. A., Kuenzi, B. M., Mehta, S., Kumar, P., Johnson, J. E., Jagtap, P. D., Griffin, T. J. & Haura, E. B., Jan 1 2019, Methods in Molecular Biology. Humana Press Inc., p. 249-261 13 p. (Methods in Molecular Biology; vol. 1977).

Research output: Chapter in Book/Report/Conference proceedingChapter

Galaxies
Proteomics
Mass Spectrometry
Workflow
Software
2017
2 Citations (Scopus)

A coupled approach utilizing immunohistochemistry and immunocytochemistry to visualize cellular lipophagy

Sathyanarayan, A., Jan 1 2017, Methods in Molecular Biology. Humana Press Inc., p. 185-191 7 p. (Methods in Molecular Biology; vol. 1554).

Research output: Chapter in Book/Report/Conference proceedingChapter

Immunohistochemistry
Autophagy
Liver
Lipids
Molecular Imaging

Carbonylated Proteins and Their Metabolic Regulation: Overview of Mechanisms, Target Proteins, and Characterization Using Proteomic Methods

Afiuni-Zadeh, S. & Griffin, T. J., Apr 20 2017, Protein Carbonylation: Principles, Analysis, and Biological Implications. wiley, p. 110-130 21 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Carbonylation
Proteins
Oxidative stress
Avidin
Biomarkers
1 Citation (Scopus)

Chapter 13: Using Galaxy for Proteomics

Guerrero, C. R., Jagtap, P. D., Johnson, J. E. & Griffin, T. J., Jan 1 2017, Proteome Informatics. Bessant, C. & Gaskell, S. J. (eds.). 5 ed. Royal Society of Chemistry, p. 289-320 32 p. (New Developments in Mass Spectrometry; vol. 2017-January, no. 5).

Research output: Chapter in Book/Report/Conference proceedingChapter

Galaxies
Mass spectrometry
Bioinformatics
Proteomics
Scalability
2 Citations (Scopus)

Comparative Metaproteomics to Study Environmental Changes

Matallana-Surget, S., Jagtap, P. D., Griffin, T. J., Beraud, M. & Wattiez, R., Oct 29 2017, Metagenomics: Perspectives, Methods, and Applications. Elsevier Inc., p. 327-363 37 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Aquatic ecosystems
Microorganisms
Ecosystems
Ecosystem
Workflow
2013
17 Citations (Scopus)

Actin Isoforms in Neuronal Development and Function

Cheever, T. R. & Ervasti, J. M., Jan 1 2013, International Review of Cell and Molecular Biology. Elsevier Inc., p. 157-213 57 p. (International Review of Cell and Molecular Biology; vol. 301).

Research output: Chapter in Book/Report/Conference proceedingChapter

Actins
Protein Isoforms
Actin Cytoskeleton
Neurons
Nervous System Diseases
19 Citations (Scopus)

Mass spectrometry-based proteomics: Basic principles and emerging technologies and directions

Van Riper, S. K., de Jong, E., Carlis, J. V. & Griffin, T. J., Jan 1 2013, Radiation Proteomics: The Effects of Ionizing and Non-Ionizing Radiation on Cells and Tissues. Springer New York LLC, p. 1-35 35 p. (Advances in Experimental Medicine and Biology; vol. 990).

Research output: Chapter in Book/Report/Conference proceedingChapter

Proteomics
Mass spectrometry
Mass Spectrometry
Technology
Biological radiation effects

Natriuretic Peptides, Their Receptors and Therapeutic Applications

Barbieri, K. & Potter, L. R., Feb 15 2013, Encyclopedia of Biological Chemistry: Second Edition. Elsevier Inc., p. 225-228 4 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Natriuretic Peptides
Peptide Receptors
Guanylate Cyclase-Coupled Receptors
C-Type Natriuretic Peptide
Hormones
2012

Emerging non-invasively collected genomic and proteomic biomarkers for the early diagnosis of oral squamous cell carcinoma (OSCC)

Kooren, J. A., Rhodus, N. L. & Griffin, T. J., Dec 1 2012, Squamous Cell Carcinoma. Nova Science Publishers, Inc., p. 197-210 14 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Biomarkers
Proteomics
Mouth Neoplasms
Early Diagnosis
Squamous Cell Carcinoma
2011
4 Citations (Scopus)

Three-dimensional peptide fractionation for highly sensitive nanoscale LC-based shotgun proteomic analysis of complex protein mixtures

Bandhakavi, S., Markowski, T. W., Xie, H. & Griffin, T. J., Nov 10 2011, Nanoproteomics: Methods and Protocols. Toms, S. & Weil, R. (eds.). p. 47-56 10 p. (Methods in Molecular Biology; vol. 790).

Research output: Chapter in Book/Report/Conference proceedingChapter

Firearms
Complex Mixtures
Proteomics
High Pressure Liquid Chromatography
Peptides
2010
3 Citations (Scopus)

Guanylyl cyclases

Potter, L. R., Dec 1 2010, Handbook of Cell Signaling, 2/e. Elsevier Inc., Vol. 2. p. 1399-1407 9 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Guanylate Cyclase
Natriuretic Peptides
Amino Acids
Endothelium-Dependent Relaxing Factors
Peptide Receptors

Intracellular Fatty Acid Transport, Activation, and Trafficking

Mashek, D., Apr 16 2010, Adipose Tissue in Health and Disease. Wiley-VCH, p. 109-127 19 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Fatty Acid-Binding Proteins
Acyl Coenzyme A
Metabolic Diseases
Metabolism
Fatty Acids
2009
1 Citation (Scopus)

Natriuretic Peptides

Bryan, P. M. & Potter, L. R., Feb 4 2009, Cardiovascular Hormone Systems. Wiley - VCH Verlag GmbH & CO. KGaA, p. 125-141 17 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

C-Type Natriuretic Peptide
Natriuretic Peptides
Brain Natriuretic Peptide
Blood pressure
Atrial Natriuretic Factor
2008
101 Citations (Scopus)

Biology of the Striated Muscle Dystrophin-Glycoprotein Complex

Ervasti, J. M. & Sonnemann, K. J., Jan 1 2008, A Survey of Cell Biology. Academic Press Inc., p. 191-225 35 p. (International Review of Cytology; vol. 265).

Research output: Chapter in Book/Report/Conference proceedingChapter

Dystrophin
Striated Muscle
Glycoproteins
Muscular Dystrophies
Muscle Cells