Research Output 1973 2019

Chapter

Intracellular Fatty Acid Transport, Activation, and Trafficking

Mashek, D., Apr 16 2010, Adipose Tissue in Health and Disease. Wiley-VCH, p. 109-127 19 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Fatty Acid-Binding Proteins
Acyl Coenzyme A
Metabolic Diseases
Metabolism
Fatty Acids
20 Citations (Scopus)

Mass spectrometry-based proteomics: Basic principles and emerging technologies and directions

Van Riper, S. K., de Jong, E., Carlis, J. V. & Griffin, T. J., Jan 1 2013, Radiation Proteomics: The Effects of Ionizing and Non-Ionizing Radiation on Cells and Tissues. Springer New York LLC, p. 1-35 35 p. (Advances in Experimental Medicine and Biology; vol. 990).

Research output: Chapter in Book/Report/Conference proceedingChapter

Proteomics
Mass spectrometry
Mass Spectrometry
Technology
Biological radiation effects
1 Citation (Scopus)

Natriuretic Peptides

Bryan, P. M. & Potter, L. R., Feb 4 2009, Cardiovascular Hormone Systems. Wiley - VCH Verlag GmbH & CO. KGaA, p. 125-141 17 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

C-Type Natriuretic Peptide
Natriuretic Peptides
Brain Natriuretic Peptide
Blood pressure
Atrial Natriuretic Factor

Natriuretic Peptides, Their Receptors and Therapeutic Applications

Barbieri, K. & Potter, L. R., Feb 15 2013, Encyclopedia of Biological Chemistry: Second Edition. Elsevier Inc., p. 225-228 4 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Natriuretic Peptides
Peptide Receptors
Guanylate Cyclase-Coupled Receptors
C-Type Natriuretic Peptide
Hormones

The galaxy platform for reproducible affinity proteomic mass spectrometry data analysis

Stewart, P. A., Kuenzi, B. M., Mehta, S., Kumar, P., Johnson, J. E., Jagtap, P. D., Griffin, T. J. & Haura, E. B., Jan 1 2019, Methods in Molecular Biology. Humana Press Inc., p. 249-261 13 p. (Methods in Molecular Biology; vol. 1977).

Research output: Chapter in Book/Report/Conference proceedingChapter

Galaxies
Proteomics
Mass Spectrometry
Workflow
Software
4 Citations (Scopus)

Three-dimensional peptide fractionation for highly sensitive nanoscale LC-based shotgun proteomic analysis of complex protein mixtures

Bandhakavi, S., Markowski, T. W., Xie, H. & Griffin, T. J., Nov 10 2011, Nanoproteomics: Methods and Protocols. Toms, S. & Weil, R. (eds.). p. 47-56 10 p. (Methods in Molecular Biology; vol. 790).

Research output: Chapter in Book/Report/Conference proceedingChapter

Firearms
Complex Mixtures
Proteomics
High Pressure Liquid Chromatography
Peptides
Comment/debate

Corrigendum: Persistent upregulation of the β-Tubulin tubb6, linked to muscle regeneration, is a source of microtubule disorganization in dystrophic muscle (Human Molecular Genetics (2019) 28:7 (1117-1135) DOI: 10.1093/hmg/ddy418)

Randazzo, D., Khalique, U., Belanto, J. J., Kenea, A., Talsness, D. M., Olthoff, J. T., Tran, M. D., Zaal, K. J., Pak, K., Pinal-Fernandez, I., Mammen, A. L., Sackett, D., Ervasti, J. M. & Ralston, E., Jun 1 2019, In : Human molecular genetics. 28, 11, 1 p.

Research output: Contribution to journalComment/debate

Open Access
Medical Genetics
Tubulin
Microtubules
Regeneration
Molecular Biology
Dystrophin
Medical Genetics
Microtubules
Molecular Biology
Phenotype

Erratum: Statement of retraction (Diabetes (2012) 61 (3114-3125))

Zhang, W., Zhang, X., Wang, H., Guo, X., Li, H., Wang, Y., Xu, X., Tan, L., Mashek, M. T., Zhang, C., Chen, Y., Mashek, D. G., Foretz, M., Zhu, C., Zhou, H., Liu, X., Viollet, B., Wu, C. & Huo, Y., Mar 1 2013, In : Diabetes. 62, 3, 1 p.

Research output: Contribution to journalComment/debate

5 Citations (Scopus)

Serum TAG analysis differentiates between genetic and obesity-associated NAFLD

Mashek, D. G. & Greenberg, A. S., Jan 1 2014, In : Diabetes. 63, 1, p. 42-44 3 p.

Research output: Contribution to journalComment/debate

Obesity
Serum
Non-alcoholic Fatty Liver Disease
2 Citations (Scopus)

The Underpinnings of PNPLA3-Mediated Fatty Liver Emerge

Shang, L. & Mashek, D. G., Jan 1 2019, (Accepted/In press) In : Hepatology.

Research output: Contribution to journalComment/debate

Fatty Liver
Conference article
Clostridium
Ethanol
Genes
Protein folding
Bacteria
Conference contribution
3 Citations (Scopus)

Generating GO slim using relational database management systems to support proteomics analysis

Onsongo, G., Xie, H., Griffin, T. J. & Carlis, J., Sep 22 2008, Proceedings of the 21st IEEE International Symposium on Computer-Based Medical Systems, CBMS 2008. p. 215-217 3 p. 4561989. (Proceedings - IEEE Symposium on Computer-Based Medical Systems).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Database Management Systems
Gene Ontology
Proteomics
Ontology
Genes

Human saliva proteome: An overview

Griffin, T. J., Jan 1 2014, Sensing Technologies for Global Health, Military Medicine, and Environmental Monitoring IV. SPIE, 91120B. (Proceedings of SPIE - The International Society for Optical Engineering; vol. 9112).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

proteome
saliva
Proteome
proteins
Proteins

The human saliva proteome: Overview and emerging methods for characterization

Griffin, T. J., Jan 1 2015, Advances in Global Health Through Sensing Technologies 2015. Southern, S. O., Gartner, C., Stallings, J. D. & Rodriguez-Chavez, I. R. (eds.). SPIE, Vol. 9490. 949003

Research output: Chapter in Book/Report/Conference proceedingConference contribution

proteome
saliva
Proteome
emerging
proteins

The proteome of human saliva

Griffin, T. J., Aug 12 2013, Sensing Technologies for Global Health, Military Medicine, and Environmental Monitoring III. 87230A. (Proceedings of SPIE - The International Society for Optical Engineering; vol. 8723).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

proteome
saliva
Proteome
Proteins
Protein
Editorial

Editorial introductions

Abumrad, N., Lange, A., Pichard, C., Meguid, M., D'Alessio, D. & Tappy, L., Jul 1 2006, In : Current opinion in clinical nutrition and metabolic care. 9, 4, p. VII-IX

Research output: Contribution to journalEditorial

Signal Transducing Adaptor Proteins
Glucokinase
Zucker Rats
Glucose-6-Phosphatase
Sorbitol
Letter
Open Access
Dimercaprol
Respiratory Insufficiency
Fluids
52 Citations (Scopus)

Multi-omic data analysis using Galaxy

Boekel, J., Chilton, J. M., Cooke, I. R., Horvatovich, P. L., Jagtap, P. D., Käll, L., Lehtiö, J., Lukasse, P., Moerland, P. D. & Griffin, T. J., Jan 1 2015, In : Nature biotechnology. 33, 2, p. 137-139 3 p.

Research output: Contribution to journalLetter

Galaxies
Computational Biology
Proteomics
Software
1 Citation (Scopus)

Prescription patterns of anti-diabetic medications and clinical outcomes in Asian patients with heart failure and diabetes mellitus

on behalf of the ASIAN-HF Investigators, May 1 2019, In : European Journal of Heart Failure. 21, 5, p. 685-688 4 p.

Research output: Contribution to journalLetter

Prescriptions
Diabetes Mellitus
Heart Failure
2 Citations (Scopus)

Sequence-specific 1H, 13C and 15N resonance assignments of the rat liver fructose-2,6-bisphosphatase domain [3]

Zangger, K., Pervushin, K., Sterk, H., Lange, A. J. & Okar, D. A., Nov 1 2003, In : Journal of Biomolecular NMR. 27, 3, p. 281-282 2 p.

Research output: Contribution to journalLetter

Nitrogen Isotopes
Phosphofructokinase-2
Carbon Isotopes
Deuterium
Liver
Paper

A high-throughput information added proteomic strategy using free flow electrophoresis and tandem mass spectrometry

Xie, H., Bandhakavi, S., Rhodus, N. L., Griffin, R. J., Carlis, J. V. & Griffin, T. J., Dec 1 2005, p. 12473-12501. 29 p.

Research output: Contribution to conferencePaper

Electrophoresis
Mass spectrometry
Throughput
Proteomics
Review article
192 Citations (Scopus)

6-Phosphofructo-2-kinase/fructose-2,6-bisphosphatase: A metabolic signaling enzyme

Pilkis, S. J., Claus, T. H., Kurland, I. J. & Lange, A. J., Jan 1 1995, In : Annual Review of Biochemistry. 64, p. 799-835 37 p.

Research output: Contribution to journalReview article

Phosphofructokinase-2
Gene therapy
Phosphorylation
Medical problems
Gene expression
41 Citations (Scopus)

Breaking fat: The regulation and mechanisms of lipophagy

Schulze, R. J., Sathyanarayan, A. & Mashek, D., Oct 1 2017, In : Biochimica et Biophysica Acta - Molecular and Cell Biology of Lipids. 1862, 10, p. 1178-1187 10 p.

Research output: Contribution to journalReview article

Fats
Research
Metabolic Diseases
Liver
Lipid Droplets
23 Citations (Scopus)

Congenital diaphragmatic hernias: From genes to mechanisms to therapies

Kardon, G., Ackerman, K. G., McCulley, D. J., Shen, Y., Wynn, J., Shang, L., Bogenschutz, E., Sun, X. & Chung, W. K., Aug 1 2017, In : DMM Disease Models and Mechanisms. 10, 8, p. 955-970 16 p.

Research output: Contribution to journalReview article

Open Access
Genes
Diaphragms
Lung
Defects
Diaphragm
48 Citations (Scopus)
Guanylate Cyclase-Coupled Receptors
Guanylate Cyclase
Ligands
Guanylate Cyclase-Activating Proteins
Atrial Natriuretic Factor Receptors
8 Citations (Scopus)

DRAGging amino Acid-mTORC1 signaling by SH3BP4

Kim, Y. M. & Kim, D. H., Jan 1 2013, In : Molecules and cells. 35, 1, p. 1-6 6 p.

Research output: Contribution to journalReview article

GTP Phosphohydrolases
Carrier Proteins
Amino Acids
Intercellular Signaling Peptides and Proteins
Tuberous Sclerosis
4 Citations (Scopus)

Dynamic range compression: A solution for proteomic biomarker discovery?

Griffin, T. J. & Bandhakavi, S., Sep 1 2011, In : Bioanalysis. 3, 18, p. 2053-2056 4 p.

Research output: Contribution to journalReview article

Body fluids
Body Fluids
Biomarkers
Post Translational Protein Processing
Proteomics
103 Citations (Scopus)

Gel-free mass spectrometry-based high throughput proteomics: Tools for studying biological response of proteins and proteomes

Roe, M. R. & Griffin, T. J., Sep 1 2006, In : Proteomics. 6, 17, p. 4678-4687 10 p.

Research output: Contribution to journalReview article

Proteome
Proteomics
Mass spectrometry
Mass Spectrometry
Gels
137 Citations (Scopus)

Guanylyl cyclase structure, function and regulation

Potter, L. R., Dec 1 2011, In : Cellular Signalling. 23, 12, p. 1921-1926 6 p.

Research output: Contribution to journalReview article

Guanylate Cyclase
Cyclic GMP
Guanylate Cyclase-Activating Proteins
Nitric Oxide
Light Signal Transduction
45 Citations (Scopus)

Hepatic fatty acid trafficking: Multiple forks in the road

Mashek, D. G., Jan 1 2013, In : Advances in Nutrition. 4, 6, p. 697-710 14 p.

Research output: Contribution to journalReview article

roads
Fatty Acids
fatty acids
liver
Liver
116 Citations (Scopus)

Long-chain acyl-CoA synthetases and fatty acid channeling

Mashek, D., Li, L. O. & Coleman, R. A., Aug 1 2007, In : Future Lipidology. 2, 4, p. 465-476 12 p.

Research output: Contribution to journalReview article

Coenzyme A Ligases
Acyl Coenzyme A
Fatty Acid Transport Proteins
Fatty Acids
Metabolic Diseases
118 Citations (Scopus)

Mammalian triacylglycerol metabolism: Synthesis, lipolysis, and signaling

Coleman, R. A. & Mashek, D., Oct 12 2011, In : Chemical Reviews. 111, 10, p. 6359-6386 28 p.

Research output: Contribution to journalReview article

Metabolism
Protein Isoforms
Triglycerides
Fats
Nutrition
1148 Citations (Scopus)

MTOR regulation of autophagy

Jung, C. H., Ro, S. H., Cao, J., Otto, N. M. & Kim, D-H., Jan 1 2010, In : FEBS Letters. 584, 7, p. 1287-1295 9 p.

Research output: Contribution to journalReview article

Autophagy
Sirolimus
Cell growth
Eukaryotic Cells
Growth
168 Citations (Scopus)

Natriuretic peptide metabolism, clearance and degradation

Potter, L. R., Jun 1 2011, In : FEBS Journal. 278, 11, p. 1808-1817 10 p.

Research output: Contribution to journalReview article

Natriuretic Peptides
Metabolism
Degradation
Guanylate Cyclase
Insulysin
636 Citations (Scopus)

Natriuretic peptides, their receptors, and cyclic guanosine monophosphate-dependent signaling functions

Potter, L. R., Abbey-Hosch, S. & Dickey, D. M., Feb 1 2006, In : Endocrine reviews. 27, 1, p. 47-72 26 p.

Research output: Contribution to journalReview article

Natriuretic Peptides
Peptide Receptors
Cyclic GMP
Cyclic Nucleotide-Gated Cation Channels
C-Type Natriuretic Peptide
3 Citations (Scopus)

Progress and Challenges in Ocean Metaproteomics and Proposed Best Practices for Data Sharing

Saito, M. A., Bertrand, E. M., Duffy, M. E., Gaylord, D. A., Held, N. A., Hervey, W. J., Hettich, R. L., Jagtap, P. D., Janech, M. G., Kinkade, D. B., Leary, D. H., McIlvin, M. R., Moore, E. K., Morris, R. M., Neely, B. A., Nunn, B. L., Saunders, J. K., Shepherd, A. I., Symmonds, N. I. & Walsh, D. A., Apr 5 2019, In : Journal of Proteome Research. 18, 4, p. 1461-1476 16 p.

Research output: Contribution to journalReview article

Information Dissemination
Practice Guidelines
Oceans and Seas
Carbon
Aquatic ecosystems
42 Citations (Scopus)

Reduction of hepatic glucose production as a therapeutic target in the treatment of diabetes

Wu, C., Okar, D. A., Kang, J. & Lange, A. J., Mar 1 2005, In : Current Drug Targets: Immune, Endocrine and Metabolic Disorders. 5, 1, p. 51-59 9 p.

Research output: Contribution to journalReview article

Glucose
Liver
Therapeutics
Enzymes
Glycogenolysis
81 Citations (Scopus)

Regulation and therapeutic targeting of peptide-activated receptor guanylyl cyclases

Potter, L. R., Jan 1 2011, In : Pharmacology and Therapeutics. 130, 1, p. 71-82 12 p.

Research output: Contribution to journalReview article

Peptide Receptors
Guanylate Cyclase
C-Type Natriuretic Peptide
Therapeutics
Dwarfism
367 Citations (Scopus)

Regulation of glucose production by the liver

Nordlie, R. C., Foster, J. D. & Lange, A. J., Aug 20 1999, In : Annual Review of Nutrition. 19, p. 379-406 28 p.

Research output: Contribution to journalReview article

Glucose
Liver
Glucokinase
Glucose-6-Phosphatase
Glycogenolysis
22 Citations (Scopus)

Regulation of intraocular pressure by soluble and membrane guanylate cyclases and their role in glaucoma

Buys, E. S., Potter, L. R., Pasquale, L. R. & Ksander, B. R., May 19 2014, In : Frontiers in Molecular Neuroscience. 7, MAY, 38.

Research output: Contribution to journalReview article

Intraocular Pressure
Glaucoma
Membranes
Optic Nerve Diseases
Natriuretic Peptides
329 Citations (Scopus)

The role of lipid droplets in metabolic disease in rodents and humans

Greenberg, A. S., Coleman, R. A., Kraemer, F. B., McManaman, J. L., Obin, M. S., Puri, V., Yan, Q. W., Miyoshi, H. & Mashek, D. G., Jun 1 2011, In : Journal of Clinical Investigation. 121, 6, p. 2102-2110 9 p.

Research output: Contribution to journalReview article

Metabolic Diseases
Rodentia
Lipids
Cholesterol Esters
Lipid Metabolism
17 Citations (Scopus)

The role of the proteasome in AML

Csizmar, C. M., Kim, D. H. & Sachs, Z., Dec 2 2016, In : Blood cancer journal. 6, 12, p. e503

Research output: Contribution to journalReview article

Proteasome Endopeptidase Complex
Acute Myeloid Leukemia
Hematologic Neoplasms
Molecular Targeted Therapy
Mantle-Cell Lymphoma
Short survey
128 Citations (Scopus)

Advances in Proteome Analysis by Mass Spectrometry

Griffin, T. J. & Aebersold, R., Dec 7 2001, In : Journal of Biological Chemistry. 276, 49, p. 45497-45500 4 p.

Research output: Contribution to journalShort survey

Proteome
Mass Spectrometry
11 Citations (Scopus)

CNP, cardiac natriuretic peptide?

Potter, L. R., May 1 2004, In : Endocrinology. 145, 5, p. 2129-2130 2 p.

Research output: Contribution to journalShort survey

C-Type Natriuretic Peptide
Natriuretic Peptides
9 Citations (Scopus)

"Corination" of the proANP converting enzyme

Potter, L. R., Feb 1 2005, In : Cell Metabolism. 1, 2, p. 88-90 3 p.

Research output: Contribution to journalShort survey

Atrial Natriuretic Factor
Natriuretic Peptides
Cardiomegaly
Enzymes
Peptide Hydrolases
165 Citations (Scopus)

Guanylyl Cyclase-linked Natriuretic Peptide Receptors: Structure and Regulation

Potter, L. R. & Hunter, T., Mar 2 2001, In : Journal of Biological Chemistry. 276, 9, p. 6057-6060 4 p.

Research output: Contribution to journalShort survey

Atrial Natriuretic Factor Receptors
Natriuretic Peptides
Peptide Receptors
Guanylate Cyclase
Glycosylation
331 Citations (Scopus)

Oxidative stress and covalent modification of protein with bioactive aldehydes

Grimsrud, P. A., Xie, H., Griffin, T. J. & Bernlohr, D. A., Aug 8 2008, In : Journal of Biological Chemistry. 283, 32, p. 21837-21841 5 p.

Research output: Contribution to journalShort survey

Protein Carbonylation
Oxidative stress
Aldehydes
Oxidative Stress
Lipids