Research Output

Multi-omic data analysis using Galaxy

Boekel, J., Chilton, J. M., Cooke, I. R., Horvatovich, P. L., Jagtap, P. D., Käll, L., Lehtiö, J., Lukasse, P., Moerland, P. D. & Griffin, T. J., Feb 2015, In : Nature biotechnology. 33, 2, p. 137-139 3 p.

Research output: Contribution to journalLetter

58 Scopus citations

Multi-omic molecular profiling of lung cancer in COPD

Sandri, B. J., Kaplan, A., Hodgson, S. W., Peterson, M., Avdulov, S. V., Higgins, L., Markowski, T., Yang, P., Limper, A. H., Griffin, T. J., Bitterman, P. B., Lock, E. & Wendt, C. H., Jul 1 2018, In : European Respiratory Journal. 52, 1, 1702665.

Research output: Contribution to journalArticle

4 Scopus citations

Multiomic Profiling of Tyrosine Kinase Inhibitor-Resistant K562 Cells Suggests Metabolic Reprogramming to Promote Cell Survival

Noel, B. M., Ouellette, S. B., Marholz, L., Dickey, D., Navis, C., Yang, T. Y., Nguyen, V., Parker, S. J., Bernlohr, D., Sachs, Z. & Parker, L. L., Apr 5 2019, In : Journal of Proteome Research. 18, 4, p. 1842-1856 15 p.

Research output: Contribution to journalArticle

3 Scopus citations

Mutation of a Conserved Motif of PP2C.D Phosphatases Confers SAUR Immunity and Constitutive Activity

Wong, J. H., Spartz, A. K., Park, M., Du, M. & Gray, W. M., Sep 1 2019, In : Plant physiology. 181, 1, p. 353-366 14 p.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations

N-/C-terminal deleted mutant of human endostatin efficiently acts as an anti-angiogenic and anti-tumorigenic agent

Cho, H., Kim, W. J., Lee, Y. M., Kim, Y. M., Kwon, Y. G., Park, Y. S., Choi, E. Y. & Kim, K. W., Jan 1 2004, In : Oncology Reports. 11, 1, p. 191-195 5 p.

Research output: Contribution to journalArticle

18 Scopus citations

N-(1-Benzyl-3,5-dimethyl‑1H‑pyrazol-4-yl)benzamides: Antiproliferative activity and effects on mTORC1 and autophagy

Ai, T., Willett, R., Williams, J., Ding, R., Wilson, D. J., Xie, J., Kim, D. H., Puertollano, R. & Chen, L., Jan 1 2017, In : ACS Medicinal Chemistry Letters. 8, 1, p. 90-95 6 p.

Research output: Contribution to journalArticle

Open Access
5 Scopus citations

Natriuretic peptide metabolism, clearance and degradation

Potter, L. R., Jun 1 2011, In : FEBS Journal. 278, 11, p. 1808-1817 10 p.

Research output: Contribution to journalReview article

173 Scopus citations

Natriuretic Peptides

Bryan, P. M. & Potter, L. R., Feb 4 2009, Cardiovascular Hormone Systems. Wiley - VCH Verlag GmbH & CO. KGaA, p. 125-141 17 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Scopus citations

Natriuretic peptides, their receptors, and cyclic guanosine monophosphate-dependent signaling functions

Potter, L. R., Abbey-Hosch, S. & Dickey, D. M., Feb 1 2006, In : Endocrine reviews. 27, 1, p. 47-72 26 p.

Research output: Contribution to journalReview article

645 Scopus citations

Natriuretic Peptides, Their Receptors and Therapeutic Applications

Barbieri, K. & Potter, L. R., Feb 15 2013, Encyclopedia of Biological Chemistry: Second Edition. Elsevier Inc., p. 225-228 4 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Negative interactions between amino acid and methylamine/ammonia transport systems of Saccharomyces cerevisiae

Roon, R. J., Levy, J. S. & Larimore, F., Dec 1 1977, In : Journal of Biological Chemistry. 252, 11, p. 3599-3604 6 p.

Research output: Contribution to journalArticle

41 Scopus citations

Neopterin/7,8-dihydroneopterin is elevated in Duchenne muscular dystrophy patients and protects mdx skeletal muscle function

Lindsay, A., Schmiechen, A., Chamberlain, C. M., Ervasti, J. M. & Lowe, D. A., Jul 1 2018, In : Experimental Physiology. 103, 7, p. 995-1009 15 p.

Research output: Contribution to journalArticle

Open Access
9 Scopus citations

New lipid-producing, cold-tolerant yellow-green alga isolated from the rocky mountains of Colorado

Nelson, D. R., Mengistu, S., Ranum, P., Celio, G., Mashek, M., Mashek, D. & Lefebvre, P. A., Jul 1 2013, In : Biotechnology Progress. 29, 4, p. 853-861 9 p.

Research output: Contribution to journalArticle

6 Scopus citations

Nitrogen catabolite repression in a glutamate auxotroph of Saccharomyces cerevisiae

Kang, L., Keeler, M. L., Dunlop, P. C. & Roon, R. J., Jan 1 1982, In : Journal of Bacteriology. 151, 1, p. 29-35 7 p.

Research output: Contribution to journalArticle

8 Scopus citations

Nitrogen catabolite repression of asparaginase II in Saccharomyces cerevisiae

Dunlop, P. C., Meyer, G. M. & Roon, R. J., Jan 1 1980, In : Journal of bacteriology. 143, 1, p. 422-426 5 p.

Research output: Contribution to journalArticle

19 Scopus citations

Novel bifunctional natriuretic peptides as potential therapeutics

Dickey, D. M., Burnett, J. C. & Potter, L. R., Dec 12 2008, In : Journal of Biological Chemistry. 283, 50, p. 35003-35009 7 p.

Research output: Contribution to journalArticle

71 Scopus citations

Oligonucleotide microarrays with high discriminating power for the detection of single nucleotide variations in the p53 gene

Hong, B. H., Oh, S. J., Ju, J., Hong, B. J., Jang, D. S., Yun, Y. S., Park, J. W. & Choi, K. Y., Dec 1 2010, In : Molecules and cells. 30, 6, p. 575-579 5 p.

Research output: Contribution to journalArticle

Online nanoscale ERLIC-MS outperforms RPLC-MS for shotgun proteomics in complex mixtures

De Jong, E. P. & Griffin, T. J., Oct 5 2012, In : Journal of Proteome Research. 11, 10, p. 5059-5064 6 p.

Research output: Contribution to journalArticle

18 Scopus citations

Overexpression of rat long chain acyl-CoA synthetase 1 alters fatty acid metabolism in rat primary hepatocytes

Li, L. O., Mashek, D. G., An, J., Doughman, S. D., Newgard, C. B. & Coleman, R. A., Dec 1 2006, In : Journal of Biological Chemistry. 281, 48, p. 37246-37255 10 p.

Research output: Contribution to journalArticle

65 Scopus citations

Overlapping roles of the glucose-responsive genes, S14 and S14R, in hepatic lipogenesis

Aipoalani, D. L., O'Callaghan, B. L., Mashek, D. G., Mariash, C. N. & Towle, H. C., May 1 2010, In : Endocrinology. 151, 5, p. 2071-2077 7 p.

Research output: Contribution to journalArticle

23 Scopus citations

Oxidative stress and covalent modification of protein with bioactive aldehydes

Grimsrud, P. A., Xie, H., Griffin, T. J. & Bernlohr, D. A., Aug 8 2008, In : Journal of Biological Chemistry. 283, 32, p. 21837-21841 5 p.

Research output: Contribution to journalShort survey

337 Scopus citations

Palmitoleate induces hepatic steatosis but suppresses liver inflammatory response in mice

Guo, X., Li, H., Xu, H., Halim, V., Zhang, W., Wang, H., Ong, K. T., Woo, S. L., Walzem, R. L., Mashek, D. G., Dong, H., Lu, F., Wei, L., Huo, Y. & Wu, C., Jun 29 2012, In : PloS one. 7, 6, e39286.

Research output: Contribution to journalArticle

82 Scopus citations

Persistent depression of synaptic responses occurs in quisqualate sensitized hippocampal slices after exposure to L-aspartate-β-hydroxamate

Roon, R. J. & Koerner, J. F., Sep 23 1996, In : Brain Research. 734, 1-2, p. 223-228 6 p.

Research output: Contribution to journalArticle

4 Scopus citations

Persistent upregulation of the β-tubulin tubb6, linked to muscle regeneration, is a source of microtubule disorganization in dystrophic muscle

Randazzo, D., Khalique, U., Belanto, J. J., Kenea, A., Talsness, D. M., Olthoff, J. T., Tran, M. D., Zaal, K. J., Pak, K., Pinal-Fernandez, I., Mammen, A. L., Sackett, D., Ervasti, J. M. & Ralston, E., Jan 1 2019, In : Human molecular genetics. 28, 7, p. 1117-1135 19 p.

Research output: Contribution to journalArticle

Open Access
3 Scopus citations

Pharmacological properties of the Ca2+-release mechanism sensitive to NAADP in the sea urchin egg

Genazzani, A. A., Mezna, M., Dickey, D. M., Michelangeli, F., Walseth, T. F. & Galione, A., Aug 12 1997, In : British Journal of Pharmacology. 121, 7, p. 1489-1495 7 p.

Research output: Contribution to journalArticle

83 Scopus citations

Phosphorylation-dependent regulation of the guanylyl cyclase-linked natriuretic peptide receptors

Potthast, R. & Potter, L. R., Jun 2005, In : Peptides. 26, 6 SPEC. ISS., p. 1001-1008 8 p.

Research output: Contribution to journalArticle

20 Scopus citations

Plasma lipoproteome in Alzheimer's disease: A proof-of-concept study

Li, D., Huang, F., Zhao, Y., Villata, P. W., Griffin, T. J., Zhang, L., Li, L. & Yu, F., Sep 20 2018, In : Clinical Proteomics. 15, 1, 31.

Research output: Contribution to journalArticle

2 Scopus citations
Open Access
6 Scopus citations

PLD2 forms a functional complex with mTOR/raptor to transduce mitogenic signals

Ha, S. H., Kim, D. H., Kim, I. S., Kim, J. H., Lee, M. N., Lee, H. J., Kim, J. H., Jang, S. K., Suh, P. G. & Ryu, S. H., Dec 1 2006, In : Cellular Signalling. 18, 12, p. 2283-2291 9 p.

Research output: Contribution to journalArticle

44 Scopus citations

Possible Site-Specific Reagent for the General Amino Acid Transport System of Saccharomyces cerevisiae

Larimore, F. S. & Roon, R. J., Jan 1 1978, In : Biochemistry. 17, 3, p. 431-436 6 p.

Research output: Contribution to journalArticle

8 Scopus citations

Preparative peptide isoelectric focusing as a tool for improving the identification of lysine-acetylated peptides from complex mixtures

Xie, H., Bandhakavi, S., Roe, M. R. & Griffin, T. J., May 1 2007, In : Journal of Proteome Research. 6, 5, p. 2019-2026 8 p.

Research output: Contribution to journalArticle

26 Scopus citations

Prescription patterns of anti-diabetic medications and clinical outcomes in Asian patients with heart failure and diabetes mellitus

on behalf of the ASIAN-HF Investigators, May 2019, In : European Journal of Heart Failure. 21, 5, p. 685-688 4 p.

Research output: Contribution to journalLetter

2 Scopus citations

ProBNP 1-108 is resistant to degradation and activates guanylyl cyclase-A with reduced potency

Dickey, D. M. & Potter, L. R., Sep 1 2011, In : Clinical chemistry. 57, 9, p. 1272-1278 7 p.

Research output: Contribution to journalArticle

27 Scopus citations

Progress and Challenges in Ocean Metaproteomics and Proposed Best Practices for Data Sharing

Saito, M. A., Bertrand, E. M., Duffy, M. E., Gaylord, D. A., Held, N. A., Hervey, W. J., Hettich, R. L., Jagtap, P. D., Janech, M. G., Kinkade, D. B., Leary, D. H., McIlvin, M. R., Moore, E. K., Morris, R. M., Neely, B. A., Nunn, B. L., Saunders, J. K., Shepherd, A. I., Symmonds, N. I. & Walsh, D. A., Apr 5 2019, In : Journal of Proteome Research. 18, 4, p. 1461-1476 16 p.

Research output: Contribution to journalReview article

3 Scopus citations

Prolonged atrial natriuretic peptide exposure stimulates guanylyl cyclase-A degradation

Flora, D. R. & Potter, L. R., Jun 1 2010, In : Endocrinology. 151, 6, p. 2769-2776 8 p.

Research output: Contribution to journalArticle

18 Scopus citations

Prostaglandin E2 stimulates angiogenesis by activating the nitric oxide/cGMP pathway in human umbilical vein endothelial cells

Namkoong, S., Lee, S. J., Kim, C. K., Kim, Y. M., Chung, H. T., Lee, H., Han, J. A., Ha, K. S., Kwon, Y. G. & Kim, Y. M., Dec 31 2005, In : Experimental and Molecular Medicine. 37, 6, p. 588-600 13 p.

Research output: Contribution to journalArticle

91 Scopus citations

Protein carbonylation and adipocyte mitochondrial function

Curtis, J. M., Hahn, W. S., Stone, M. D., Inda, J. J., Droullard, D. J., Kuzmicic, J. P., Donoghue, M. A., Long, E. K., Armien, A. G., Lavandero, S., Arriaga, E., Griffin, T. J. & Bernlohr, D. A., Sep 21 2012, In : Journal of Biological Chemistry. 287, 39, p. 32967-32980 14 p.

Research output: Contribution to journalArticle

43 Scopus citations

Protein kinase D1 and the β1 integrin cytoplasmic domain control β1 integrin function via regulation of Rap1 activation

Medeiros, R. B., Dickey, D. M., Chung, H., Quale, A. C., Nagarajan, L. R., Billadeau, D. D. & Shimizu, Y., Aug 1 2005, In : Immunity. 23, 2, p. 213-226 14 p.

Research output: Contribution to journalArticle

69 Scopus citations
5 Scopus citations

Proteomic mapping of 4-hydroxynonenal protein modification sites by solid-phase hydrazide chemistry and mass spectrometry

Roe, M. R., Xie, H., Bandhakavi, S. & Griffin, T. J., May 15 2007, In : Analytical chemistry. 79, 10, p. 3747-3756 10 p.

Research output: Contribution to journalArticle

75 Scopus citations

Proteomics analysis of cells in whole saliva from oral cancer patients via value-added three-dimensional peptide fractionation and tandem mass spectrometry

Xie, H., Onsongo, G., Popko, J., de Jong, E. P., Cao, J., Carlis, J. V., Griffin, R. J., Rhodus, N. L. & Griffin, T. J., Mar 1 2008, In : Molecular and Cellular Proteomics. 7, 3, p. 486-498 13 p.

Research output: Contribution to journalArticle

77 Scopus citations

Quadriceps myopathy caused by skeletal muscle-specific ablation of βcyto-actin

Prins, K. W., Call, J. A., Lowe, D. A. & Ervasti, J. M., Mar 15 2011, In : Journal of cell science. 124, 6, p. 951-957 7 p.

Research output: Contribution to journalArticle

19 Scopus citations

Quantitative nuclear proteomics identifies mTOR regulation of DNA damage response

Bandhakavi, S., Kim, Y. M., Ro, S. H., Xie, H., Onsongo, G., Jun, C. B., Kim, D. H. & Griffin, T. J., Feb 1 2010, In : Molecular and Cellular Proteomics. 9, 2, p. 403-414 12 p.

Research output: Contribution to journalArticle

35 Scopus citations
15 Scopus citations

Quantitative proteomics reveals myosin and actin as promising saliva biomarkers for distinguishing pre-malignant and malignant oral lesions

de Jong, E. P., Xie, H., Onsongo, G., Stone, M. D., Chen, X. B., Kooren, J. A., Refsland, E. W., Griffin, R. J., Ondrey, F. G., Wu, B., Le, C. T., Rhodus, N. L., Carlis, J. V. & Griffin, T. J., Aug 11 2010, In : PloS one. 5, 6, e11148.

Research output: Contribution to journalArticle

68 Scopus citations

QuanTP: A Software Resource for Quantitative Proteo-Transcriptomic Comparative Data Analysis and Informatics

Kumar, P., Panigrahi, P., Johnson, J. E., Weber, W. J., Mehta, S., Sajulga, R., Easterly, C., Crooker, B. A., Heydarian, M., Anamika, K., Griffin, T. J. & Jagtap, P. D., Feb 1 2019, In : Journal of Proteome Research. 18, 2, p. 782-790 9 p.

Research output: Contribution to journalArticle

Quisqualic Acid Analogues: Synthesis of β-Heterocyclic 2-Aminopropanoic Acid Derivatives and Their Activity at a Novel Quisqualate-Sensitized Site

Subasinghe, N., Schulte, M., Roon, R. J., Koerner, J. F. & Johnson, R. L., Nov 1 1992, In : Journal of medicinal chemistry. 35, 24, p. 4602-4607 6 p.

Research output: Contribution to journalArticle

27 Scopus citations