Research Output

Improved intensity-based label-free quantification via proximity-based intensity normalization (PIN)

Van Riper, S. K., de Jong, E., Higgins, L., Carlis, J. V. & Griffin, T. J., Mar 7 2014, In : Journal of Proteome Research. 13, 3, p. 1281-1292 12 p.

Research output: Contribution to journalArticle

4 Scopus citations
Open Access

Independent variability of microtubule perturbations associated with dystrophinopathy

Belanto, J. J., Olthoff, J. T., Mader, T. L., Chamberlain, C. M., Nelson, D. M., McCourt, P. M., Talsness, D. M., Gundersen, G. G., Lowe, D. A. & Ervasti, J. M., Nov 15 2016, In : Human molecular genetics. 25, 22, p. 4951-4961 11 p.

Research output: Contribution to journalArticle

Open Access
17 Scopus citations

Inhibition of amino acid transport by ammonium ion in Saccharomyces cerevisiae

Roon, R. J., Larimore, F. & Levy, J. S., Dec 1 1975, In : Journal of bacteriology. 124, 1, p. 325-331 7 p.

Research output: Contribution to journalArticle

36 Scopus citations
26 Scopus citations

Insulin-degrading enzyme modulates the natriuretic peptide-mediated signaling response

Ralat, L. A., Guo, Q., Ren, M., Funke, T., Dickey, D. M., Potter, L. R. & Tang, W. J., Feb 11 2011, In : Journal of Biological Chemistry. 286, 6, p. 4670-4679 10 p.

Research output: Contribution to journalArticle

45 Scopus citations

Insulin signalling to mTOR mediated by the Akt/PKB substrate PRAS40

Haar, E. V., Lee, S. I., Bandhakavi, S., Griffin, T. J. & Kim, D. H., Mar 1 2007, In : Nature Cell Biology. 9, 3, p. 316-323 8 p.

Research output: Contribution to journalArticle

772 Scopus citations

Integrated Regulation of Hepatic Lipid and Glucose Metabolism by Adipose Triacylglycerol Lipase and FoxO Proteins

Zhang, W., Bu, S. Y., Mashek, M. T., O-Sullivan, I. S., Sibai, Z., Khan, S. A., Ilkayeva, O., Newgard, C. B., Mashek, D. G. & Unterman, T. G., Apr 12 2016, In : Cell reports. 15, 2, p. 349-359 11 p.

Research output: Contribution to journalArticle

Open Access
22 Scopus citations

Integrative effects of dystrophin loss on metabolic function of the mdx mouse

Strakova, J., Kamdar, F., Kulhanek, D., Razzoli, M., Garry, D. J., Ervasti, J. M., Bartolomucci, A. & Townsend, D. W., Dec 1 2018, In : Scientific reports. 8, 1, 13624.

Research output: Contribution to journalArticle

Open Access
2 Scopus citations

Internal deletion compromises the stability of dystrophin

Henderson, D. M., Belanto, J. J., Li, B., Heun-Johnson, H. & Ervasti, J. M., Aug 1 2011, In : Human molecular genetics. 20, 15, p. 2955-2963 9 p., ddr199.

Research output: Contribution to journalArticle

29 Scopus citations

Intracellular Fatty Acid Transport, Activation, and Trafficking

Mashek, D., Apr 16 2010, Adipose Tissue in Health and Disease. Wiley-VCH, p. 109-127 19 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Investigation of in vivo fatty acid metabolism in AFABP/aP2-/- mice

Baar, R. A., Dingfelder, C. S., Smith, L. A., Bernlohr, D. A., Wu, C., Lange, A. J. & Parks, E. J., Jan 1 2005, In : American Journal of Physiology - Endocrinology and Metabolism. 288, 1 51-1, p. E187-E193

Research output: Contribution to journalArticle

85 Scopus citations

Involvement of inducible 6-phosphofructo-2-kinase in the anti-diabetic effect of peroxisome proliferator-activated receptor γ activation in mice

Guo, X., Xu, K., Zhang, J., Li, H., Zhang, W., Wang, H., Lange, A. J., Chen, Y. E., Huo, Y. & Wu, C., Jul 30 2010, In : Journal of Biological Chemistry. 285, 31, p. 23711-23720 10 p.

Research output: Contribution to journalArticle

25 Scopus citations

Iron-sparing response of mycobacterium avium subsp. paratuberculosis is strain dependent

Janagama, H. K., Senthilkumar, Bannantine, J. P., Kugadas, A., Jagtap, P., Higgins, L., Witthuhn, B. A. & Sreevatsan, S., Oct 26 2010, In : BMC microbiology. 10, 268.

Research output: Contribution to journalArticle

15 Scopus citations

Isometric resistance training increases strength and alters histopathology of dystrophin-deficient mouse skeletal muscle

Lindsay, A., Larson, A. A., Verma, M., Ervasti, J. M. & Lowe, D. A., Feb 2019, In : Journal of applied physiology. 126, 2, p. 363-375 13 p.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations

iTRAQ reagent-based quantitative proteomic analysis on a linear ion trap mass spectrometer

Griffin, T. J., Xie, H., Bandhakavi, S., Popko, J., Mohan, A., Carlis, J. V. & Higgins, L. A., Nov 1 2007, In : Journal of Proteome Research. 6, 11, p. 4200-4209 10 p.

Research output: Contribution to journalArticle

120 Scopus citations

Large-scale phosphoproteomics analysis of whole saliva reveals a distinct phosphorylation pattern

Stone, M. D., Chen, X., McGowan, T., Bandhakavi, S., Cheng, B., Rhodus, N. L. & Griffin, T. J., Apr 1 2011, In : Journal of Proteome Research. 10, 4, p. 1728-1736 9 p.

Research output: Contribution to journalArticle

36 Scopus citations

L Asparaginase of Saccharomyces cerevisiae: an extracellular enzyme

Dunlop, P. C. & Roon, R. J., Dec 1 1975, In : Journal of bacteriology. 122, 3, p. 1017-1024 8 p.

Research output: Contribution to journalArticle

35 Scopus citations

Lipid droplet-associated kinase STK25 regulates peroxisomal activity and metabolic stress response in steatotic liver

Nerstedt, A., Kurhe, Y., Cansby, E., Caputo, M., Gao, L., Vorontsov, E., Ståhlman, M., Nuñez-Durán, E., Borén, J., Marschall, H. U., Mashek, D. G., Saunders, D. N., Sihlbom, C., Hoy, A. J. & Mahlapuu, M., Feb 1 2020, In : Journal of lipid research. 61, 2, p. 178-191 14 p.

Research output: Contribution to journalArticle

Lipocalin 2 is a selective modulator of peroxisome proliferator-activated receptor-γ activation and function in lipid homeostasis and energy expenditure

Jin, D., Guo, H., Bu, S. Y., Zhang, Y., Hannaford, J., Mashek, D. G. & Chen, X., Feb 1 2011, In : FASEB Journal. 25, 2, p. 754-764 11 p.

Research output: Contribution to journalArticle

48 Scopus citations

Lipophagy-derived fatty acids undergo extracellular efflux via lysosomal exocytosis

Cui, W., Sathyanarayan, A., Lopresti, M., Aghajan, M., Chen, C. & Mashek, D. G., Jan 1 2020, (Accepted/In press) In : Autophagy.

Research output: Contribution to journalArticle

Long-chain acyl-CoA synthetases and fatty acid channeling

Mashek, D. G., Li, L. O. & Coleman, R. A., Aug 1 2007, In : Future Lipidology. 2, 4, p. 465-476 12 p.

Research output: Contribution to journalReview article

126 Scopus citations

Loss of peroxiredoxin-2 exacerbates eccentric contraction-induced force loss in dystrophin-deficient muscle

Olthoff, J. T., Lindsay, A., Abo-Zahrah, R., Baltgalvis, K. A., Patrinostro, X., Belanto, J. J., Yu, D. Y., Perrin, B. J., Garry, D. J., Rodney, G. G., Lowe, D. A. & Ervasti, J. M., Dec 1 2018, In : Nature communications. 9, 1, 5104.

Research output: Contribution to journalArticle

Open Access
8 Scopus citations

L-Quisqualic acid transport into hippocampal neurons by a cystine-sensitive carrier is required for the induction of quisqualate sensitization

Chase, L. A., Roon, R. J., Wellman, L., Beitz, A. J. & Koerner, J. F., Sep 6 2001, In : Neuroscience. 106, 2, p. 287-301 15 p.

Research output: Contribution to journalArticle

22 Scopus citations

Luteinizing hormone reduces the activity of the NPR2 guanylyl cyclase in mouse ovarian follicles, contributing to the cyclic GMP decrease that promotes resumption of meiosis in oocytes

Robinson, J. W., Zhang, M., Shuhaibar, L. C., Norris, R. P., Geerts, A., Wunder, F., Eppig, J. J., Potter, L. R. & Jaffe, L. A., Jun 15 2012, In : Developmental Biology. 366, 2, p. 308-316 9 p.

Research output: Contribution to journalArticle

87 Scopus citations

Lysophosphatidic acid activates peroxisome proliferator activated receptor-γ in CHO cells that over-express glycerol 3-phosphate acyltransferase-1

Stapleton, C. M., Mashek, D. G., Wang, S., Nagle, C. A., Cline, G. W., Thuillier, P., Leesnitzer, L. M., Li, L. O., Stimmel, J. B., Shulman, G. I. & Coleman, R. A., May 2 2011, In : PloS one. 6, 4, e18932.

Research output: Contribution to journalArticle

28 Scopus citations

Lysophosphatidic acid inhibits C-type natriuretic peptide activation of guanylyl cyclase-B

Abbey, S. E. & Potter, L. R., Jan 1 2003, In : Endocrinology. 144, 1, p. 240-246 7 p.

Research output: Contribution to journalArticle

39 Scopus citations

Maintenance of α-helical structures by phenyl rings in the active-site tyrosine triad contributes to catalysis and stability of ketosteroid isomerase from Pseudomonas putida biotype B

Nam, G. H., Jang, D. S., Cha, S. S., Lee, T. H., Kim, D. H., Hong, B. H., Yun, Y. S., Oh, B. H. & Choi, K. Y., Nov 13 2001, In : Biochemistry. 40, 45, p. 13529-13537 9 p.

Research output: Contribution to journalArticle

11 Scopus citations

Mammalian triacylglycerol metabolism: Synthesis, lipolysis, and signaling

Coleman, R. A. & Mashek, D. G., Oct 12 2011, In : Chemical Reviews. 111, 10, p. 6359-6386 28 p.

Research output: Contribution to journalReview article

122 Scopus citations

Mass spectrometry-based proteomics: Basic principles and emerging technologies and directions

Van Riper, S. K., De Jong, E. P., Carlis, J. V. & Griffin, T. J., 2013, Radiation Proteomics: The Effects of Ionizing and Non-Ionizing Radiation on Cells and Tissues. Springer New York LLC, p. 1-35 35 p. (Advances in Experimental Medicine and Biology; vol. 990).

Research output: Chapter in Book/Report/Conference proceedingChapter

21 Scopus citations

Metaproteomic analysis using the Galaxy framework

Jagtap, P. D., Blakely, A., Murray, K., Stewart, S., Kooren, J., Johnson, J. E., Rhodus, N. L., Rudney, J. & Griffin, T. J., Oct 2015, In : Proteomics. 15, 20, p. 3553-3565 13 p.

Research output: Contribution to journalArticle

34 Scopus citations

MetaQuantome: An integrated, quantitative metaproteomics approach reveals connections between taxonomy and protein function in complex microbiomes

Easterly, C. W., Sajulga, R., Mehta, S., Johnson, J., Kumar, P., Hubler, S., Mesuere, B., Rudney, J., Griffin, T. J. & Jagtap, P. D., Jan 1 2019, In : Molecular and Cellular Proteomics. 18, 8, p. S82-S91

Research output: Contribution to journalArticle

Open Access
2 Scopus citations

Methylamine and ammonia transport in Saccharomyces cerevisiae

Roon, R. J., Even, H. L., Dunlop, P. & Larimore, F. L., Dec 1 1975, In : Journal of bacteriology. 122, 2, p. 502-503 2 p.

Research output: Contribution to journalArticle

80 Scopus citations

Mitochondrial PE potentiates respiratory enzymes to amplify skeletal muscle aerobic capacity

Heden, T. D., Johnson, J. M., Ferrara, P. J., Eshima, H., Verkerke, A. R. P., Wentzler, E. J., Siripoksup, P., Narowski, T. M., Coleman, C. B., Lin, C. T., Ryan, T. E., Reidy, P. T., de Castro Brás, L. E., Karner, C. M., Burant, C. F., Alan Maschek, J., Cox, J. E., Mashek, D. G., Kardon, G., Boudina, S. & 7 others, Zeczycki, T. N., Rutter, J., Shaikh, S. R., Vance, J. E., Drummond, M. J., Darrell Neufer, P. & Funai, K., Sep 11 2019, In : Science advances. 5, 9, eaax8352.

Research output: Contribution to journalArticle

Open Access
2 Scopus citations

Mouse model of muscleblind-like 1 overexpression: Skeletal muscle effects and therapeutic promise

Chamberlain, C. M. & Ranum, L. P. W., Nov 1 2012, In : Human molecular genetics. 21, 21, p. 4645-4654 10 p., dds306.

Research output: Contribution to journalArticle

42 Scopus citations

Mouse models of two missense mutations in actin-binding domain 1 of dystrophin associated with duchenne or becker muscular dystrophy

McCourt, J. L., Talsness, D. M., Lindsay, A., Arpke, R. W., Chatterton, P. D., Nelson, D. M., Chamberlain, C. M., Olthoff, J. T., Belanto, J. J., McCourt, P. M., Kyba, M., Lowe, D. A. & Ervasti, J. M., Feb 1 2018, In : Human molecular genetics. 27, 3, p. 451-462 12 p.

Research output: Contribution to journalArticle

Open Access
5 Scopus citations

MTORC1 phosphorylates UVRAG to negatively regulate autophagosome and endosome maturation

Kim, Y. M., Jung, C. H., Seo, M., Kim, E. K., Park, J. M., Bae, S. S. & Kim, D. H., Jan 22 2015, In : Molecular Cell. 57, 2, p. 207-218 12 p.

Research output: Contribution to journalArticle

92 Scopus citations

mTOR-regulated U2af1 tandem exon splicing specifies transcriptome features for translational control

Chang, J. W., Yeh, H. S., Park, M., Erber, L., Sun, J., Cheng, S., Bui, A. M., Fahmi, N. A., Nasti, R., Kuang, R., Chen, Y., Zhang, W. & Yong, J., Nov 4 2019, In : Nucleic acids research. 47, 19, p. 10373-10387 15 p.

Research output: Contribution to journalArticle

Open Access

MTOR regulation of autophagy

Jung, C. H., Ro, S. H., Cao, J., Otto, N. M. & Kim, D-H., Jan 1 2010, In : FEBS Letters. 584, 7, p. 1287-1295 9 p.

Research output: Contribution to journalReview article

1202 Scopus citations

Multi-isotope imaging mass spectrometry reveals slow protein turnover in hair-cell stereocilia

Zhang, D. S., Piazza, V., Perrin, B. J., Rzadzinska, A. K., Poczatek, J. C., Wang, M., Prosser, H. M., Ervasti, J. M., Corey, D. P. & Lechene, C. P., Jan 26 2012, In : Nature. 481, 7382, p. 520-524 5 p.

Research output: Contribution to journalArticle

123 Scopus citations

Multi-omic data analysis using Galaxy

Boekel, J., Chilton, J. M., Cooke, I. R., Horvatovich, P. L., Jagtap, P. D., Käll, L., Lehtiö, J., Lukasse, P., Moerland, P. D. & Griffin, T. J., Feb 2015, In : Nature biotechnology. 33, 2, p. 137-139 3 p.

Research output: Contribution to journalLetter

64 Scopus citations

Multi-omic molecular profiling of lung cancer in COPD

Sandri, B. J., Kaplan, A., Hodgson, S. W., Peterson, M., Avdulov, S. V., Higgins, L., Markowski, T., Yang, P., Limper, A. H., Griffin, T. J., Bitterman, P. B., Lock, E. & Wendt, C. H., Jul 1 2018, In : European Respiratory Journal. 52, 1, 1702665.

Research output: Contribution to journalArticle

Open Access
5 Scopus citations

Multiomic Profiling of Tyrosine Kinase Inhibitor-Resistant K562 Cells Suggests Metabolic Reprogramming to Promote Cell Survival

Noel, B. M., Ouellette, S. B., Marholz, L., Dickey, D., Navis, C., Yang, T. Y., Nguyen, V., Parker, S. J., Bernlohr, D., Sachs, Z. & Parker, L. L., Apr 5 2019, In : Journal of Proteome Research. 18, 4, p. 1842-1856 15 p.

Research output: Contribution to journalArticle

3 Scopus citations

Multi-omics Visualization Platform: An extensible Galaxy plug-in for multi-omics data visualization and exploration

Mcgowan, T., Johnson, J. E., Kumar, P., Sajulga, R., Mehta, S., Jagtap, P. D. & Griffin, T. J., Apr 6 2020, In : GigaScience. 9, 4, giaa025.

Research output: Contribution to journalArticle

Open Access

Mutation of a conserved motif of PP2C.D phosphatases confers SAUR immunity and constitutive activity

Wong, J. H., Spartz, A. K., Park, M., Du, M. & Gray, W. M., Sep 2019, In : Plant physiology. 181, 1, p. 353-366 14 p.

Research output: Contribution to journalArticle

Open Access
3 Scopus citations

N-/C-terminal deleted mutant of human endostatin efficiently acts as an anti-angiogenic and anti-tumorigenic agent

Cho, H., Kim, W. J., Lee, Y. M., Kim, Y. M., Kwon, Y. G., Park, Y. S., Choi, E. Y. & Kim, K. W., Jan 1 2004, In : Oncology Reports. 11, 1, p. 191-195 5 p.

Research output: Contribution to journalArticle

18 Scopus citations

N-(1-Benzyl-3,5-dimethyl‑1H‑pyrazol-4-yl)benzamides: Antiproliferative activity and effects on mTORC1 and autophagy

Ai, T., Willett, R., Williams, J., Ding, R., Wilson, D. J., Xie, J., Kim, D. H., Puertollano, R. & Chen, L., Jan 1 2017, In : ACS Medicinal Chemistry Letters. 8, 1, p. 90-95 6 p.

Research output: Contribution to journalArticle

Open Access
6 Scopus citations

Natriuretic peptide metabolism, clearance and degradation

Potter, L. R., Jun 1 2011, In : FEBS Journal. 278, 11, p. 1808-1817 10 p.

Research output: Contribution to journalReview article

175 Scopus citations

Natriuretic Peptides

Bryan, P. M. & Potter, L. R., Feb 4 2009, Cardiovascular Hormone Systems. Wiley - VCH Verlag GmbH & CO. KGaA, p. 125-141 17 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Scopus citations

Natriuretic peptides, their receptors, and cyclic guanosine monophosphate-dependent signaling functions

Potter, L. R., Abbey-Hosch, S. & Dickey, D. M., Feb 1 2006, In : Endocrine reviews. 27, 1, p. 47-72 26 p.

Research output: Contribution to journalReview article

658 Scopus citations