Research Output

Carbonylated Proteins and Their Metabolic Regulation: Overview of Mechanisms, Target Proteins, and Characterization Using Proteomic Methods

Afiuni-Zadeh, S. & Griffin, T. J., Apr 20 2017, Protein Carbonylation: Principles, Analysis, and Biological Implications. Wiley, p. 110-130 21 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

176 Scopus citations

Cardiac phosphatase-deficient 6-phosphofructo-2-kinase/fructose-2,6- bisphosphatase increases glycolysis, hypertrophy, and myocyte resistance to hypoxia

Wang, Q., Donthi, R. V., Wang, J., Lange, A. J., Watson, L. J., Jones, S. P. & Epstein, P. N., Jun 1 2008, In : American Journal of Physiology - Heart and Circulatory Physiology. 294, 6, p. H2889-H2897

Research output: Contribution to journalArticle

25 Scopus citations

Catalytically active guanylyl cyclase B requires endoplasmic reticulum-mediated glycosylation, and mutations that inhibit this process cause dwarfism

Dickey, D. M., Edmund, A. B., Otto, N. M., Chaffee, T. S., Robinson, J. W. & Potter, L. R., May 20 2016, In : Journal of Biological Chemistry. 291, 21, p. 11385-11393 9 p.

Research output: Contribution to journalArticle

Open Access
9 Scopus citations

Cell biology assessment of glucokinase mutations V62M and G72R in pancreatic β-cells: Evidence for cellular instability of catalytic activity

Arden, C., Trainer, A., De La Iglesia, N., Scougall, K. T., Gloyn, A. L., Lange, A. J., Shaw, J. A. M., Matschinsky, F. M. & Agius, L., Jul 1 2007, In : Diabetes. 56, 7, p. 1773-1782 10 p.

Research output: Contribution to journalArticle

15 Scopus citations

Challenges in Peptide-Spectrum Matching: A Robust and Reproducible Statistical Framework for Removing Low-Accuracy, High-Scoring Hits

Hubler, S. L., Kumar, P., Mehta, S., Easterly, C., Johnson, J. E., Jagtap, P. D. & Griffin, T. J., Jan 3 2020, In : Journal of Proteome Research. 19, 1, p. 161-173 13 p.

Research output: Contribution to journalArticle

Chapter 13: Using Galaxy for Proteomics

Guerrero, C. R., Jagtap, P. D., Johnson, J. E. & Griffin, T. J., Jan 1 2017, Proteome Informatics. Bessant, C. & Gaskell, S. J. (eds.). 5 ed. Royal Society of Chemistry, p. 289-320 32 p. (New Developments in Mass Spectrometry; vol. 2017-January, no. 5).

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Scopus citations

Characterization of a Dio-9-resistant strain of Saccharomyces cerevisiae

Roon, R. J., Larimore, F. S., Meyer, G. M. & Kreisle, R. A., Jan 15 1978, In : Archives of Biochemistry and Biophysics. 185, 1, p. 142-150 9 p.

Research output: Contribution to journalArticle

13 Scopus citations

Characterization of a Novel Ser-cisSer-Lys Catalytic Triad in Comparison with the Classical Ser-His-Asp Triad

Shin, S., Yun, Y. S., Koo, H. M., Kim, Y. S., Choi, K. Y. & Oh, B. H., Jul 4 2003, In : Journal of Biological Chemistry. 278, 27, p. 24937-24943 7 p.

Research output: Contribution to journalArticle

44 Scopus citations

Characterization of two forms of asparaginase in Saccharomyces cerevisiae

Dunlop, P. C., Meyer, G. M., Ban, D. & Roon, R. J., Jan 1 1978, In : Journal of Biological Chemistry. 253, 4, p. 1297-1304 8 p.

Research output: Contribution to journalArticle

50 Scopus citations

Characterizing cardiac molecular mechanisms of mammalian hibernation via quantitative proteogenomics

Vermillion, K. L., Jagtap, P. D., Johnson, J. E., Griffin, T. J. & Andrews, M. T., Nov 6 2015, In : Journal of Proteome Research. 14, 11, p. 4792-4804 13 p.

Research output: Contribution to journalArticle

18 Scopus citations

Chronic Obstructive Pulmonary Disease Phenotype Dictates Cancer-Promoting Stromal Gene Expression Programs

Wendt, C. H., Sandri, B. J., Masvidal, L., Murie, C., Bartish, M., Avdulov, S. V., Higgins, L., Markowski, T., Peterson, M., Bergh, J., Yang, P., Rolny, C., Limper, A. H., Griffin, T. J., Bitterman, P. B. & Larsson, O., Dec 1 2018, In : Annals of the American Thoracic Society. 15, 4, p. S290-S291

Research output: Contribution to journalArticle

Open Access
1 Scopus citations

CNP, cardiac natriuretic peptide?

Potter, L. R., May 2004, In : Endocrinology. 145, 5, p. 2129-2130 2 p.

Research output: Contribution to journalShort survey

12 Scopus citations

Community-Driven Data Analysis Training for Biology

Galaxy Training Network, Jun 27 2018, In : Cell Systems. 6, 6, p. 752-758.e1

Research output: Contribution to journalArticle

Open Access
7 Scopus citations

Comparative Metaproteomics to Study Environmental Changes

Matallana-Surget, S., Jagtap, P. D., Griffin, T. J., Beraud, M. & Wattiez, R., Jan 1 2018, Metagenomics: Perspectives, Methods, and Applications. Elsevier Inc., p. 327-363 37 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2 Scopus citations

Compound loss of muscleblind-like function in myotonic dystrophy

Lee, K. Y., Li, M., Manchanda, M., Batra, R., Charizanis, K., Mohan, A., Warren, S. A., Chamberlain, C. M., Finn, D., Hong, H., Ashraf, H., Kasahara, H., Ranum, L. P. W. & Swanson, M. S., Dec 2013, In : EMBO Molecular Medicine. 5, 12, p. 1887-1900 14 p.

Research output: Contribution to journalArticle

78 Scopus citations

Context-dependent functional substitution of α-skeletal actin by γ-cytoplasmic actin

Jaeger, M. A., Sonnemann, K. J., Fitzsimons, D. P., Prins, K. W. & Ervasti, J. M., Jul 1 2009, In : FASEB Journal. 23, 7, p. 2205-2214 10 p.

Research output: Contribution to journalArticle

25 Scopus citations

Contribution of conserved amino acids at the dimeric interface to the conformational stability and the structural integrity of the active site in ketosteroid isomerase from Pseudomonas putida biotype B

Nam, G. H., Kim, D. H., Ha, N. C., Jang, D. S., Yun, Y. S., Hong, B. H., Oh, B. H. & Choi, K. Y., Jul 1 2003, In : Journal of Biochemistry. 134, 1, p. 101-110 10 p.

Research output: Contribution to journalArticle

5 Scopus citations
19 Scopus citations

"Corination" of the proANP converting enzyme

Potter, L. R., Feb 1 2005, In : Cell Metabolism. 1, 2, p. 88-90 3 p.

Research output: Contribution to journalShort survey

9 Scopus citations

Corrigendum: Persistent upregulation of the β-Tubulin tubb6, linked to muscle regeneration, is a source of microtubule disorganization in dystrophic muscle (Human Molecular Genetics (2019) 28:7 (1117-1135) DOI: 10.1093/hmg/ddy418)

Randazzo, D., Khalique, U., Belanto, J. J., Kenea, A., Talsness, D. M., Olthoff, J. T., Tran, M. D., Zaal, K. J., Pak, K., Pinal-Fernandez, I., Mammen, A. L., Sackett, D., Ervasti, J. M. & Ralston, E., Jun 1 2019, In : Human molecular genetics. 28, 11, 1 p.

Research output: Contribution to journalComment/debate

Open Access

Creatine kinase B is necessary to limit myoblast fusion during myogenesis

Simionescu-Bankston, A., Pichavant, C., Canner, J. P., Apponi, L. H., Wang, Y., Steeds, C., Olthoff, J. T., Belanto, J. J., Ervasti, J. M. & Pavlath, G. K., Jun 1 2015, In : American Journal of Physiology - Cell Physiology. 308, 11, p. C919-C931

Research output: Contribution to journalArticle

7 Scopus citations

Crystal structure of the Gtr1pGTP-Gtr2pGDP protein complex reveals large structural rearrangements triggered by GTP-to-GDP conversion

Jeong, J. H., Lee, K. H., Kim, Y-M., Kim, D-H., Oh, B. H. & Kim, Y. G., Aug 24 2012, In : Journal of Biological Chemistry. 287, 35, p. 29648-29653 6 p.

Research output: Contribution to journalArticle

40 Scopus citations

Cyclic AMP controls mTOR through regulation of the dynamic interaction between Rheb and phosphodiesterase 4D

Kim, H. W., Ha, S. H., Lee, M. N., Huston, E., Kim, D. H., Jang, S. K., Suh, P. G., Houslay, M. D. & Ryu, S. H., Nov 2010, In : Molecular and cellular biology. 30, 22, p. 5406-5420 15 p.

Research output: Contribution to journalArticle

40 Scopus citations

Cyclobutane quisqualic acid analogues as selective mGluR5a metabotropic glutamic acid receptor ligands

Littman, L., Tokar, C., Venkatraman, S., Roon, R. J., Koerner, J. F., Robinson, M. B. & Johnson, R. L., May 6 1999, In : Journal of Medicinal Chemistry. 42, 9, p. 1639-1647 9 p.

Research output: Contribution to journalArticle

16 Scopus citations

Data Independent Acquisition in Practice: Foundations and Resources for Implementing DIA

Neely, B., Kirkpatrick, J., Midha, M., Stemmer, P., Martin, L. R., Wang, Y., Herring, L., Phinney, B., Shan, B., Chien, A. & Jagtap, P., Dec 1 2019, In : Journal of biomolecular techniques : JBT. 30, p. S46

Research output: Contribution to journalArticle

Deep metaproteomic analysis of human salivary supernatant

Jagtap, P., Mcgowan, T., Bandhakavi, S., Tu, Z. J., Seymour, S., Griffin, T. J. & Rudney, J. D., Apr 1 2012, In : Proteomics. 12, 7, p. 992-1001 10 p.

Research output: Contribution to journalArticle

54 Scopus citations

Delayed embryonic development and impaired cell growth and survival in Actg1 null mice

Bunnell, T. M. & Ervasti, J. M., Sep 1 2010, In : Cytoskeleton. 67, 9, p. 564-572 9 p.

Research output: Contribution to journalArticle

45 Scopus citations
50 Scopus citations

Dephosphorylation and inactivation of NPR2 guanylyl cyclase in granulosa cells contributes to the LH-induced decrease in cGMP that causes resumption of meiosis in rat oocytes

Egbert, J. R., Shuhaibar, L. C., Edmund, A. B., Van Helden, D. A., Robinson, J. W., Uliasz, T. F., Baena, V., Geerts, A., Wunder, F., Potter, L. R. & Jaffe, L. A., Sep 2014, In : Development (Cambridge). 141, 18, p. 3594-3604 11 p.

Research output: Contribution to journalArticle

49 Scopus citations

Dephosphorylation of juxtamembrane serines and threonines of the NPR2 guanylyl cyclase is required for rapid resumption of oocyte meiosis in response to luteinizing hormone

Shuhaibar, L. C., Egbert, J. R., Edmund, A. B., Uliasz, T. F., Dickey, D. M., Yee, S. P., Potter, L. R. & Jaffe, L. A., Jan 1 2016, In : Developmental Biology. 409, 1, p. 194-201 8 p.

Research output: Contribution to journalArticle

Open Access
27 Scopus citations

Dephosphorylation of the NPR2 guanylyl cyclase contributes to inhibition of bone growth by fibroblast growth factor

Shuhaibar, L. C., Robinson, J. W., Vigone, G., Shuhaibar, N. P., Egbert, J. R., Baena, V., Uliasz, T. F., Kaback, D., Yee, S. P., Feil, R., Fisher, M. C., Dealy, C. N., Potter, L. R. & Jaffe, L. A., Dec 4 2017, In : eLife. 6, e31343.

Research output: Contribution to journalArticle

Open Access
7 Scopus citations

Derepression of asparaginase II during exponential growth of Saccharomyces cerevisiae on ammonium ion

Roon, R. J., Murdoch, M., Kunze, B. & Dunlop, P. C., Nov 1982, In : Archives of Biochemistry and Biophysics. 219, 1, p. 101-109 9 p.

Research output: Contribution to journalArticle

12 Scopus citations

Destabilization of the dystrophin-glycoprotein complex without functional deficits in α-dystrobrevin null muscle

Bunnell, T. M., Jaeger, M. A., Fitzsimons, D. P., Prins, K. W. & Ervasti, J. M., Jul 2 2008, In : PloS one. 3, 7, e2604.

Research output: Contribution to journalArticle

14 Scopus citations
80 Scopus citations
48 Scopus citations

Disease-proportional proteasomal degradation of missense dystrophins

Talsness, D. M., Belanto, J. J. & Ervasti, J. M., Oct 6 2015, In : Proceedings of the National Academy of Sciences of the United States of America. 112, 40, p. 12414-12419 6 p.

Research output: Contribution to journalArticle

5 Scopus citations

Disseminating metaproteomic informatics capabilities and knowledge using the galaxy-P framework

Blank, C., Easterly, C., Gruening, B., Johnson, J., Kolmeder, C. A., Kumar, P., May, D., Mehta, S., Mesuere, B., Brown, Z., Elias, J. E., Hervey, W. J., McGowan, T., Muth, T., Nunn, B. L., Rudney, J., Tanca, A., Griffin, T. J. & Jagtap, P. D., Mar 1 2018, In : Proteomes. 6, 1, 7.

Research output: Contribution to journalArticle

Open Access
15 Scopus citations

Distinct cancer-promoting stromal gene expression depending on lung function

Sandri, B. J., Masvidal, L., Murie, C., Bartish, M., Avdulov, S., Higgins, L. A., Markowski, T., Peterson, M., Bergh, J., Yang, P., Rolny, C., Limper, A. H., Griffin, T. J., Bitterman, P. B., Wendt, C. H. & Larsson, O., Aug 1 2019, In : American journal of respiratory and critical care medicine. 200, 3, p. 348-358 11 p.

Research output: Contribution to journalArticle

4 Scopus citations

Distinct functions of Ulk1 and Ulk2 in the regulation of lipid metabolism in adipocytes

Ro, S. H., Jung, C. H., Hahn, W. S., Xu, X., Kim, Y. M., Yun, Y. S., Park, J. M., Kim, K. H., Seo, M., Ha, T. Y., Arriaga, E. A., Bernlohr, D. A. & Kim, D. H., Dec 1 2013, In : Autophagy. 9, 12, p. 2103-2114 12 p.

Research output: Contribution to journalArticle

40 Scopus citations

Distinct mechanical properties in homologous spectrin-like repeats of utrophin

Rajaganapathy, S., McCourt, J. L., Ghosal, S., Lindsay, A., McCourt, P. M., Lowe, D. A., Ervasti, J. M. & Salapaka, M. V., Dec 1 2019, In : Scientific reports. 9, 1, 5210.

Research output: Contribution to journalArticle

Open Access
48 Scopus citations
35 Scopus citations
3 Scopus citations

DRAGging amino Acid-mTORC1 signaling by SH3BP4

Kim, Y. M. & Kim, D. H., Jan 1 2013, In : Molecules and cells. 35, 1, p. 1-6 6 p.

Research output: Contribution to journalReview article

9 Scopus citations

Dual role of phosphofructokinase-2/fructose bisphosphatase-2 in regulating the compartmentation and expression of glucokinase in hepatocytes

Payne, V. A., Arden, C., Wu, C., Lange, A. J. & Agius, L., Jul 1 2005, In : Diabetes. 54, 7, p. 1949-1957 9 p.

Research output: Contribution to journalArticle

42 Scopus citations
Open Access
1 Scopus citations

Dynamic range compression: A solution for proteomic biomarker discovery?

Griffin, T. J. & Bandhakavi, S., Sep 1 2011, In : Bioanalysis. 3, 18, p. 2053-2056 4 p.

Research output: Contribution to journalReview article

4 Scopus citations

Dystrophin and utrophin have distinct effects on the structural dynamics of actin

Prochniewicz, E., Henderson, D., Ervasti, J. M. & Thomas, D. D., May 12 2009, In : Proceedings of the National Academy of Sciences of the United States of America. 106, 19, p. 7822-7827 6 p.

Research output: Contribution to journalArticle

36 Scopus citations