Research Output 1978 2018

2018

Identification of conserved, primary sequence motifs that direct retrovirus RNA fate

Singh, G., Rife, BD., Seufzer, B., Salemi, M., Rendahl, A. & Boris-Lawrie, K., Aug 21 2018, In : Nucleic Acids Research. 46, 14, p. 7366-7378 13 p.

Research output: Contribution to journalArticle

Open Access
Conserved Sequence
Retroviridae
RNA
HIV
T-Lymphocytes
2017
8 Citations

A New Combination of a Pleuromutilin Derivative and Doxycycline for Treatment of Multidrug-Resistant Acinetobacter baumannii

Siricilla, S., Mitachi, K., Yang, J., Eslamimehr, S., Lemieux, M. R., Meibohm, B., Ji, Y. & Kurosu, M., Apr 13 2017, In : Journal of Medicinal Chemistry. 60, 7, p. 2869-2878 10 p.

Research output: Contribution to journalArticle

Acinetobacter baumannii
Doxycycline
Pharmaceutical Preparations
Colistin
Tobramycin

Draft Genome Sequences of Biofilm-Forming and Non-Biofilm-Forming Nontyphoidal Salmonella enterica Serovars.

Shetty, D., Grigoryan, AA., Alshalchi, S., Withana Gamage, N., Roy, J., Lawrence, JR., Vidovic, S. & Korber, D., Sep 28 2017, In : Genome Announcements. 5, 39, PMID: 28963222.

Research output: Contribution to journalArticle

Open Access
Salmonella enterica
Biofilms
Salmonella
Genome
Serogroup
5 Citations

Effector mechanisms of humoral immunity to porcine reproductive and respiratory syndrome virus

Rahe, M. C. & Murtaugh, M. P., Apr 1 2017, In : Veterinary Immunology and Immunopathology. 186, p. 15-18 4 p.

Research output: Contribution to journalReview article

Porcine respiratory and reproductive syndrome virus
Porcine reproductive and respiratory syndrome virus
Humoral Immunity
humoral immunity
Porcine Reproductive and Respiratory Syndrome
7 Citations

First genome report and analysis of chicken H7N9 influenza viruses with poly-basic amino acids insertion in the hemagglutinin cleavage site

Chen, J., Zhang, J., Zhu, W., Zhang, Y., Tan, H., Liu, M., Cai, M., Shen, J., Ly, H. & Chen, J., Dec 1 2017, In : Scientific reports. 7, 1, 9972.

Research output: Contribution to journalArticle

H7N9 Subtype Influenza A Virus
Basic Amino Acids
Hemagglutinins
Orthomyxoviridae
Chickens
3 Citations

Genotypic relatedness and antimicrobial resistance of Salmonella Heidelberg isolated from chickens and turkeys in the midwestern United States

Nisar, M., Kassem, I. I., Rajashekara, G., Goyal, S. M., Lauer, D., Voss, S. & Nagaraja, K. V., May 1 2017, In : Journal of Veterinary Diagnostic Investigation. 29, 3, p. 370-375 6 p.

Research output: Contribution to journalArticle

Midwestern United States
Salmonella Heidelberg
Salmonella
antibiotic resistance
Chickens

Isolation of cognate RNA-protein complexes from cells using oligonucleotide-directed elution

Singh, G., Fritz, S. M., Ranji, A., Singh, D. & Boris-Lawrie, K., Jan 16 2017, In : Journal of Visualized Experiments. 2017, 119, e54391.

Research output: Contribution to journalArticle

Oligonucleotides
RNA
RNA-Binding Proteins
Proteins
Messenger RNA
6 Citations

Mechanisms of adaptive immunity to porcine reproductive and respiratory syndrome virus

Rahe, M. C. & Murtaugh, M. P., Jun 13 2017, In : Viruses. 9, 6, 148.

Research output: Contribution to journalReview article

Porcine respiratory and reproductive syndrome virus
Adaptive Immunity
Virus Diseases
Immunity
Viruses
1 Citations

Pathogenicity and transmission of a swine influenza A(H6N6) virus

Sun, H., Kaplan, B. S., Guan, M., Zhang, G., Ye, J., Long, L. P., Blackmon, S., Yang, C. K., Chiang, M. J., Xie, H., Zhao, N., Cooley, J., Smith, D. F., Liao, M., Cardona, C., Li, L., Wang, G. P., Webby, R. & Wan, X. F., Apr 12 2017, In : Emerging Microbes and Infections. 6, 4, e17.

Research output: Contribution to journalArticle

Influenza A virus
Ferrets
Virulence
Swine
Viruses
2 Citations

Prevalence and antimicrobial resistance patterns of Campylobacter spp. isolated from retail meat in Lahore, Pakistan

Nisar, M., Ahmad, M. U. D., Mushtaq, M. H., Shehzad, W., Hussain, A., Muhammad, J., Nagaraja, K. V. & Goyal, S. M., Oct 1 2017, In : Food Control. 80, p. 327-332 6 p.

Research output: Contribution to journalArticle

Campylobacter
Pakistan
antibiotic resistance
Meat
food animals
3 Citations

Prevalence and genotyping of methicillin-resistant and – susceptible Staphylococcus aureus strains isolated from patients in a university hospital, Isfahan, Iran

Havaei, S. A., Halaji, M., Vidovic, S., Dillon, J. A. R., Karbalaei, M., Ghanbari, F., Namvar, A. E., Esfahani, B. N., Havaei, S. M. & Azimian, A., May 1 2017, In : Jundishapur Journal of Microbiology. 10, 5, e13571.

Research output: Contribution to journalArticle

Methicillin-Resistant Staphylococcus aureus
Iran
Coagulase
Multilocus Sequence Typing
Restriction Fragment Length Polymorphisms
2 Citations

Strong influence of livestock environments on the emergence and dissemination of distinct multidrug-resistant phenotypes among the population of non-typhoidal Salmonella

An, R., Alshalchi, S., Breimhurst, P., Munoz-Aguayo, J., Flores-Figueroa, C. & Vidovic, S., Jun 1 2017, In : PloS one. 12, 6, e0179005.

Research output: Contribution to journalArticle

Salmonella
Livestock
Agriculture
Macrolides
livestock
2016
15 Citations

Ecology of the Tick-Borne Phlebovirus Causing Severe Fever with Thrombocytopenia Syndrome in an Endemic Area of China

Li, Z., Bao, C., Hu, J., Liu, W., Wang, X., Zhang, L., Ji, Z., Feng, Z., Li, L., Shen, A., Liu, X., Zhao, H., Tan, W., Zhou, J., Qi, X., Zhu, Y., Tang, F., Cardona, C. J. & Xing, Z., Apr 1 2016, In : PLoS Neglected Tropical Diseases. 10, 4, e0004574.

Research output: Contribution to journalArticle

Phlebovirus
Ticks
Ecology
Thrombocytopenia
China
9 Citations
Escherichia coli O157
Ecology
Epidemiology
Food Chain
Hemolytic-Uremic Syndrome
21 Citations

Genomic and evolutionary inferences between American and global strains of porcine epidemic diarrhea virus

Jarvis, M. C., Lam, H. C., Zhang, Y., Wang, L., Hesse, R. A., Hause, B. M., Vlasova, A., Wang, Q., Zhang, J., Nelson, M. I., Murtaugh, M. P. & Marthaler, D., Jan 1 2016, In : Preventive Veterinary Medicine. 123, p. 175-184 10 p.

Research output: Contribution to journalArticle

Porcine epidemic diarrhea virus
Genome
genomics
genome
phylogeny
2 Citations

Isolation of cognate cellular and viral ribonucleoprotein complexes of HIV-1 rna applicable to proteomic discovery and molecular investigations

Singh, D., Boeras, I., Singh, G. & Boris-Lawrie, K., Jan 1 2016, Methods in Molecular Biology. Humana Press Inc., p. 133-146 14 p. (Methods in Molecular Biology; vol. 1354).

Research output: Chapter in Book/Report/Conference proceedingChapter

Ribonucleoproteins
Proteomics
HIV-1
RNA-Binding Proteins
RNA
4 Citations

Synaptogyrin-2 promotes replication of a novel tick-borne bunyavirus through interacting with viral nonstructural protein NSs

Sun, Q., Qi, X., Zhang, Y., Wu, X., Liang, M., Li, C., Li, D., Cardona, C. J. & Xing, Z., Jul 29 2016, In : Journal of Biological Chemistry. 291, 31, p. 16138-16149 12 p.

Research output: Contribution to journalArticle

Synaptogyrins
Viral Nonstructural Proteins
Orthobunyavirus
Ticks
Inclusion Bodies
46 Citations

The wMel Strain of Wolbachia Reduces Transmission of Chikungunya Virus in Aedes aegypti

Aliota, M. T., Walker, E. C., Uribe Yepes, A., Dario Velez, I., Christensen, B. M. & Osorio, J. E., Apr 28 2016, In : PLoS Neglected Tropical Diseases. 10, 4, e0004677.

Research output: Contribution to journalArticle

Chikungunya virus
Wolbachia
Aedes
Culicidae
Dengue Virus
2015
6 Citations
Pichinde virus
Lymphocytic choriomeningitis virus
macrophage activation
Macrophage Activation
Tacaribe virus
22 Citations

Evolutionary diversification of type 2 porcine reproductive and respiratory syndrome virus

Brar, M. S., Shi, M., Murtaugh, M. P. & Leung, F. C. C., Jan 1 2015, In : Journal of General Virology. 96, 7, p. 1570-1580 11 p.

Research output: Contribution to journalReview article

Porcine respiratory and reproductive syndrome virus
Genotype
Virulence
Ancient History
Swine
4 Citations

HIV-1 and two avian retroviral 5' untranslated regions bind orthologous human and chicken RNA binding proteins

Stake, M., Singh, D., Singh, G., Marcela Hernandez, J., Kaddis Maldonado, R., Parent, L. J. & Boris-Lawrie, K., Dec 1 2015, In : Virology. 486, p. 307-320 14 p.

Research output: Contribution to journalArticle

RNA-Binding Proteins
5' Untranslated Regions
HIV-1
Chickens
Retroviridae
1 Citations

In situ peptide-MHC-II tetramer staining of antigen-specific CD4+ T cells in tissues

Dileepan, T., Kim, H. O., Cleary, P. P. & Skinner, P. J., Jun 11 2015, In : PloS one. 10, 6, e0128862.

Research output: Contribution to journalArticle

CD4 Antigens
T-cells
T-lymphocytes
peptides
Tissue
16 Citations

In Vitro and In Vivo characterizations of pichinde viral nucleoprotein exoribonuclease functions

Huang, Q., Shao, J., Lan, S., Zhou, Y., Xing, J., Dong, C., Liang, Y. & Ly, H., Jan 1 2015, In : Journal of virology. 89, 13, p. 6595-6607 13 p.

Research output: Contribution to journalArticle

exoribonucleases
Exoribonucleases
Arenavirus
nucleoproteins
Nucleoproteins
1 Citations

One medicine one science and policy

Sriramarao, P., Murtaugh, M. P., Berger, K., Travis, D., Kennedy, S., Steer, C. J. & Cardona, C., Jan 16 2015, In : Science. 347, 6219, 1 p.

Research output: Contribution to journalLetter

12 Citations
Enterovirus
Mitogen-Activated Protein Kinases
Epithelial Cells
Enterovirus Infections
Phosphotransferases
11 Citations

The AirSR two-component system contributes to Staphylococcus aureus survival in human blood and transcriptionally regulates sspABC operon

Hall, J. W., Yang, J., Guo, H. & Ji, Y., Jan 1 2015, In : Frontiers in Microbiology. 6, JUL, 682.

Research output: Contribution to journalArticle

Operon
Staphylococcus aureus
Virulence Factors
Survival
Opsonin Proteins
4 Citations

The novel transcriptional regulator SA1804 Is involved in mediating the invasion and cytotoxicity of Staphylococcus aureus

Yang, J., Liang, X. & Ji, Y., Jan 1 2015, In : Frontiers in Microbiology. 6, MAR, 174.

Research output: Contribution to journalArticle

Virulence
Staphylococcus aureus
Virulence Factors
Epithelial Cells
Regulon
9 Citations

ZnO nanoparticles impose a panmetabolic toxic effect along with strong necrosis, inducing activation of the envelope stress response in Salmonella enterica serovar Enteritidis

Vidovic, S., Elder, J., Medihala, P., Lawrence, J. R., Predicala, B., Zhang, H. & Korber, D. R., Jan 1 2015, In : Antimicrobial agents and chemotherapy. 59, 6, p. 3317-3328 12 p.

Research output: Contribution to journalArticle

Salmonella enteritidis
Poisons
Nanoparticles
Necrosis
Metal Nanoparticles
2014
14 Citations

Characterization of chikungunya virus induced host response in a mouse model of viral myositis

Dhanwani, R., Khan, M., Lomash, V., Rao, P. V. L., Ly, H. & Parida, M., Mar 25 2014, In : PloS one. 9, 3, e92813.

Research output: Contribution to journalArticle

Chikungunya virus
myositis
Myositis
Viruses
animal models

Investigation of staphylococcus aureus adhesion and invasion of host cells

Yang, J. & Ji, Y., 2014, Methods in Molecular Biology. Humana Press Inc., Vol. 1085. p. 187-194 8 p. (Methods in Molecular Biology; vol. 1085).

Research output: Chapter in Book/Report/Conference proceedingChapter

Staphylococcus aureus
Bacterial Adhesion
Methicillin-Resistant Staphylococcus aureus
Fibronectins
Cell Wall
6 Citations

Investigation of staphylococcus aureus adhesion and invasion of host cells

Yang, J. & Ji, Y., Jan 1 2014, Methicillin-Resistant Staphylococcus Aureus (MRSA) Protocols. Humana Press Inc., p. 187-194 8 p. (Methods in Molecular Biology; vol. 1085).

Research output: Chapter in Book/Report/Conference proceedingChapter

Staphylococcus aureus
Bacterial Adhesion
Methicillin-Resistant Staphylococcus aureus
Fibronectins
Cell Wall
39 Citations

Live simian immunodeficiency virus vaccine correlate of protection: Local antibody production and concentration on the path of virus entry

Li, Q., Zeng, M., Duan, L., Voss, J. E., Smith, A. J., Pambuccian, S., Shang, L., Wietgrefe, S., Southern, P. J., Reilly, C. S., Skinner, P. J., Zupancic, M. L., Carlis, J. V., Piatak, M., Waterman, D., Reeves, R. K., Masek-Hammerman, K., Derdeyn, C. A., Alpert, M. D., Evans, D. T. & 7 othersKohler, H., Müller, S., Robinson, J., Lifson, J. D., Burton, D. R., Johnson, R. P. & Haase, A. T., Sep 15 2014, In : Journal of Immunology. 193, 6, p. 3113-3125 13 p.

Research output: Contribution to journalArticle

Simian Immunodeficiency Virus
Virus Internalization
Antibody Formation
Vaccines
Epithelium

Metabolomic investigation of methicillin-resistant staphylococcus aureus

Lei, T., Wang, L., Chen, C. & Ji, Y., 2014, Methods in Molecular Biology. Humana Press Inc., Vol. 1085. p. 251-258 8 p. (Methods in Molecular Biology; vol. 1085).

Research output: Chapter in Book/Report/Conference proceedingChapter

Metabolomics
Methicillin-Resistant Staphylococcus aureus
Staphylococcus aureus
Bacteria
Metabolic Engineering
3 Citations

Metabolomic investigation of methicillin-resistant staphylococcus aureus

Lei, T., Wang, L., Chen, C. & Ji, Y., Jan 1 2014, Methicillin-Resistant Staphylococcus Aureus (MRSA) Protocols. Humana Press Inc., p. 251-258 8 p. (Methods in Molecular Biology; vol. 1085).

Research output: Chapter in Book/Report/Conference proceedingChapter

Metabolomics
Methicillin-Resistant Staphylococcus aureus
Staphylococcus aureus
Bacteria
Metabolic Engineering
1 Citations

Pharmacokinetics of gallium maltolate in Lawsonia intracellularis-infected and uninfected rabbits

Sampieri, F., Alcorn, J., Allen, A. L., Clark, C. R., Vannucci, F. A., Pusterla, N., Mapes, S., Ball, K. R., Dowling, P. M., Thompson, J., Bernstein, L. R., Gebhart, C. J. & Hamilton, D. L., Jan 1 2014, In : Journal of Veterinary Pharmacology and Therapeutics. 37, 5, p. 486-499 14 p.

Research output: Contribution to journalArticle

Lawsonia Bacteria
gallium
Lawsonia intracellularis
Gallium
pharmacokinetics

Preface

Ji, Y., Jan 1 2014, Methicillin-Resistant Staphylococcus Aureus (MRSA) Protocols. Humana Press Inc., Vol. 1085. (Methods in Molecular Biology; vol. 1085).

Research output: Chapter in Book/Report/Conference proceedingForeword/postscript

26 Citations

Roles of viroplasm-like structures formed by nonstructural protein NSs in infection with severe fever with thrombocytopenia syndrome virus

Wu, X., Qi, X., Liang, M., Li, C., Cardona, C. J., Li, D. & Xing, Z., Jan 1 2014, In : FASEB Journal. 28, 6, p. 2504-2516 13 p.

Research output: Contribution to journalArticle

Viruses
Thrombocytopenia
Fever
Phlebovirus
Infection
3 Citations

Transcriptomic analysis of staphylococcus aureus using microarray and advanced next-generation RNA-seq Technologies

Lei, T., Becker, A. & Ji, Y., Jan 1 2014, Methicillin-Resistant Staphylococcus Aureus (MRSA) Protocols. Humana Press Inc., p. 213-229 17 p. (Methods in Molecular Biology; vol. 1085).

Research output: Chapter in Book/Report/Conference proceedingChapter

RNA Sequence Analysis
Transcriptome
Staphylococcus aureus
Technology
Decontamination
10 Citations

Using crude whole-genome assemblies of Neisseria gonorrhoeae as a platform for strain analysis: Clonal spread of gonorrhea infection in saskatchewan, Canada

Vidovic, S., Caron, C., Taheri, A., Thakur, S. D., Read, T. D., Kusalik, A. & Dillon, J. A. R., Jan 1 2014, In : Journal of Clinical Microbiology. 52, 10, p. 3772-3776 5 p.

Research output: Contribution to journalArticle

Saskatchewan
Neisseria gonorrhoeae
Gonorrhea
Canada
Genome
38 Citations

Vaccination against staphylococcus aureus pneumonia

Spaulding, A. R., Salgado-Pabón, W., Merriman, J. A., Stach, C., Ji, Y., Gillman, A. N., Peterson, M. L. & Schlievert, P. M., Jun 15 2014, In : Journal of Infectious Diseases. 209, 12, p. 1955-1962 8 p.

Research output: Contribution to journalArticle

Staphylococcal Pneumonia
Staphylococcus aureus
Vaccination
Superantigens
Cytotoxins
2013
9 Citations

Antisense RNA regulation and application in the development of novel antibiotics to combat multidrug resistant bacteria

Ji, Y. & Lei, T., Mar 1 2013, In : Science Progress. 96, 1, p. 43-60 18 p.

Research output: Contribution to journalArticle

Antisense RNA
Anti-Bacterial Agents
Bacteria
Peptide Nucleic Acids
Bacterial Genes
6 Citations
Lawsonia Bacteria
porcine proliferative enteritis
Lawsonia intracellularis
Reproduction
Virulence
12 Citations

Cellular RNA helicases and HIV-1: insights from genome-wide, proteomic, and molecular studies.

Chen, C. Y., Liu, X., Boris-Lawrie, K., Sharma, A. & Jeang, K. T., Jan 1 2013, In : Unknown Journal. 171, 2, p. 357-365 9 p.

Research output: Contribution to journalReview article

RNA Helicases
RNA
Proteomics
HIV-1
Genes

Gain-of-function experiments on H7N9

Fouchier, R. A. M., Kawaoka, Y., Cardona, C., Compans, R. W., García-Sastre, A., Govorkova, E. A., Guan, Y., Herfst, S., Orenstein, W. A., Peiris, J. S. M., Perez, D. R., Richt, J. A., Russell, C., Schultz-Cherry, S. L., Smith, D. J., Steel, J., Tompkins, S. M., Topham, D. J., Treanor, J. J., Tripp, R. A. & 2 othersWebby, R. J. & Webster, R. G., 2013, In : Science. 341, 6146, p. 612-613 2 p.

Research output: Contribution to journalArticle

9 Citations

Gain-of-function experiments on H7N9

Fouchier, R. A. M., Kawaoka, Y., Cardona, C., Compans, R. W., García-Sastre, A., Govorkova, E. A., Guan, Y., Herfst, S., Orenstein, W. A., Malik Peiris, J. S., PEREZ, D. R., Richt, J. A., Russell, C., Schultz-Cherry, S. L., Smith, D. J., Steel, J., Mark Tompkins, S., Topham, D. J., Treanor, J. J., Tripp, R. A. & 2 othersWebby, R. J. & Webster, R. G., Aug 9 2013, In : Science. 341, 6146, p. 612-613 2 p.

Research output: Contribution to journalLetter

Brassinosteroids
Phosphotransferases
Leucine
Steroids
Embryonic Development
2 Citations

Infection of sparrows (Passer domesticus) and different mice strains with lawsonia intracellularis

Viott, A. D. M., França, S. A., Vannucci, F. A., Cruz, E. C. C., Costa, M. C., Gebhart, C. J. & Guedes, R. M. C., Mar 1 2013, In : Pesquisa Veterinaria Brasileira. 33, 3, p. 372-378 7 p.

Research output: Contribution to journalArticle

Lawsonia Bacteria
Sparrows
Lawsonia intracellularis
Passeriformes
Passer domesticus
16 Citations

Location and dynamics of the immunodominant CD8 T cell response to SIVΔnef immunization and SIVmac251 vaginal challenge

Sasikala-Appukuttan, A. K., Kim, H. O., Kinzel, N. J., Hong, J. J., Smith, A. J., Wagstaff, R., Reilly, C., Piatak, M., Lifson, J. D., Reeves, R. K., Johnson, R. P., Haase, A. T. & Skinner, P. J., Dec 9 2013, In : PloS one. 8, 12, e81623.

Research output: Contribution to journalArticle

Immunization
SAIDS Vaccines
T-cells
live vaccines
HIV-1
10 Citations

Molecular and antimicrobial susceptibility analyses distinguish clinical from bovine Escherichia coli O157 strains

Vidovic, S., Tsoi, S., Medihala, P., Liu, J., Wylie, J. L., Levett, P. N. & Korber, D. R., Jan 1 2013, In : Journal of Clinical Microbiology. 51, 7, p. 2082-2088 7 p.

Research output: Contribution to journalArticle

Escherichia coli O157
Virulence
Bacteriocin Plasmids
Sulfisoxazole
Genotype
68 Citations

Molecular evolution of PRRSV in Europe: Current state of play

Stadejek, T., Stankevicius, A., Murtaugh, M. P. & Oleksiewicz, M. B., Mar 25 2013, In : Veterinary Microbiology. 165, 1-2, p. 21-28 8 p.

Research output: Contribution to journalArticle

Porcine respiratory and reproductive syndrome virus
Molecular Evolution
Porcine reproductive and respiratory syndrome virus
nucleocapsid proteins
Nucleocapsid Proteins