Research Output 1953 2020

Filter
Chapter
2019

Activity-based protein profiling methods to study bacteria: The power of small-molecule electrophiles

Sharifzadeh, S., Shirley, J. D. & Carlson, E. E., Jan 1 2019, Current Topics in Microbiology and Immunology. Springer- Verlag, p. 23-48 26 p. (Current Topics in Microbiology and Immunology; vol. 420).

Research output: Chapter in Book/Report/Conference proceedingChapter

Biological Phenomena
Bacteria
Pharmaceutical Preparations
Proteins
Drug Discovery

A quantitative FRET assay for the upstream cleavage activity of the integral membrane proteases human ZMPSTE24 and yeast Ste24

Hsu, E. T., Vervacke, J. S., Distefano, M. D. & Hrycyna, C. A., Jan 1 2019, Methods in Molecular Biology. Humana Press Inc., p. 279-293 15 p. (Methods in Molecular Biology; vol. 2009).

Research output: Chapter in Book/Report/Conference proceedingChapter

Peptide Hydrolases
Yeasts
Membranes
Mating Factor
Enzymes

Cysteine-ethylation of tissue-extracted membrane proteins as a tool to detect conformational states by solid-state NMR spectroscopy

Weber, D. K., Bader, T., Larsen, E. K., Wang, S., Tata, G., Distefano, M. D. & Veglia, G., Jan 1 2019, Methods in Enzymology. Shukla, A. K. (ed.). Academic Press Inc., p. 281-304 24 p. (Methods in Enzymology; vol. 621).

Research output: Chapter in Book/Report/Conference proceedingChapter

Nuclear magnetic resonance spectroscopy
Cysteine
Membrane Proteins
Magnetic Resonance Spectroscopy
Nuclear magnetic resonance

Optimization of metabolic labeling with Alkyne-containing isoprenoid probes

Ahmadi, M., Suazo, K. F. G. & Distefano, M. D., Jan 1 2019, Methods in Molecular Biology. Humana Press Inc., p. 35-43 9 p. (Methods in Molecular Biology; vol. 2009).

Research output: Chapter in Book/Report/Conference proceedingChapter

Alkynes
Terpenes
Protein Prenylation
Proteins
Monomeric GTP-Binding Proteins

Site-Selective Enzymatic Labeling of Designed Ankyrin Repeat Proteins Using Protein Farnesyltransferase

Zhang, Y., Auger, S., Schaefer, J. V., Plückthun, A. & Distefano, M. D., Jan 1 2019, Methods in Molecular Biology. Humana Press Inc., p. 207-219 13 p. (Methods in Molecular Biology; vol. 2033).

Research output: Chapter in Book/Report/Conference proceedingChapter

Ankyrin Repeat
Proteins
Azides
Terpenes
Modern 1601-history

Synthesis and NMR Characterization of the Prenylated Peptide, a-Factor

Bader, T. K., Rappe, T. M., Veglia, G. & Distefano, M. D., Jan 1 2019, Methods in Enzymology. Wand, A. J. (ed.). Academic Press Inc., p. 207-238 32 p. (Methods in Enzymology; vol. 614).

Research output: Chapter in Book/Report/Conference proceedingChapter

Prenylation
Nuclear magnetic resonance
Peptides
Mating Factor
Yeast
2018
16 Citations (Scopus)

The Minnesota density functionals and their applications to problems in mineralogy and geochemistry

Zhao, Y. & Truhlar, D. G., Nov 15 2018, Theoretical and Computational Methods in Mineral Physics: Geophysical Applications. Walter de Gruyter GmbH, p. 19-38 20 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Geochemistry
Mineralogy

The Wacker process

Race, N. J., Patel, H. H. & Sigman, M. S., Jan 1 2018, Catalytic Oxidation in Organic Synthesis. Muniz, K. (ed.). Georg Thieme Verlag, p. 429-448 20 p. (Science of Synthesis; vol. 4).

Research output: Chapter in Book/Report/Conference proceedingChapter

Alkenes
alkenes
Palladium
palladium
selectivity
2017
2 Citations (Scopus)

Identifying multiple active conformations in the G protein-coupled receptor activation landscape using computational methods

Dong, S., Goddard, W. A. & Abrol, R., Jan 1 2017, Methods in Cell Biology. Academic Press Inc., p. 111-118 8 p. (Methods in Cell Biology; vol. 142).

Research output: Chapter in Book/Report/Conference proceedingChapter

G-Protein-Coupled Receptors
Molecular Dynamics Simulation
Drug Delivery Systems
Membrane Proteins
2016
1 Citation (Scopus)

A Semiautomated Assignment Protocol for Methyl Group Side Chains in Large Proteins

Kim, J. J., Wang, Y., Li, G. & Veglia, G., Jan 1 2016, Methods in Enzymology. Academic Press Inc., p. 35-57 23 p. (Methods in Enzymology; vol. 566).

Research output: Chapter in Book/Report/Conference proceedingChapter

Nuclear magnetic resonance
Cyclic AMP-Dependent Protein Kinases
Labeling
Proteins
Isoleucine
1 Citation (Scopus)

Enzymatic Kinetic Isotope Effects from Path-Integral Free Energy Perturbation Theory

Gao, J., 2016, Methods in Enzymology. Voth, G. A. (ed.). Academic Press Inc., p. 359-388 30 p. (Methods in Enzymology; vol. 577).

Research output: Chapter in Book/Report/Conference proceedingChapter

Isotopes
Free energy
Kinetics
Sampling
Enzymes
5 Citations (Scopus)

Explicit polarization theory

Wang, Y., Mazack, M. J. M., Truhlar, D. G. & Gao, J., Mar 14 2016, Many-Body Effects and Electrostatics in Biomolecules. Pan Stanford Publishing Pte. Ltd., p. 33-63 31 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

polarization
1 Citation (Scopus)

HNO Donors: Angeli's Salt and Related Diazeniumdiolates

Basudhar, D., Bharadwaj, G., Salmon, D. J. & Miranda, K. M., Sep 1 2016, The Chemistry and Biology of Nitroxyl (HNO). Elsevier Inc., p. 11-36 26 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Decomposition
Nitroso Compounds
Nitrogen Oxides
Purification
Nitric Oxide
4 Citations (Scopus)

Oriented Attachment and Nonclassical Formation in Iron Oxides

Soltis, J. A. & Penn, L., Apr 29 2016, Iron Oxides: From Nature to Applications. Wiley, p. 243-267 25 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Crystallization
Crystals
Edge dislocations
Redox reactions
Growth kinetics
2 Citations (Scopus)

Synthesis and Study of Sustainable Polymers in the Organic Chemistry Laboratory: An Inquiry-Based Experiment Exploring the Effects of Size and Composition on the Properties of Renewable Block Polymers

Fahnhorst, G. W., Swingen, Z. J., Schneiderman, D. K., Blaquiere, C. S., Wentzel, M. T. & Wissinger, J. E., Jan 1 2016, Green Chemistry Experiments in Undergraduate Laboratories. Fahey, J. T. & Maelia, L. E. (eds.). American Chemical Society, p. 123-147 25 p. (ACS Symposium Series; vol. 1233).

Research output: Chapter in Book/Report/Conference proceedingChapter

Block copolymers
Polymers
Chemical analysis
Experiments
Accreditation

The synthesis of macrocycles by Huisgen cycloaddition

Pehere, A. D. & Abell, A. D., Jan 2 2016, (Submitted) Practical Medicinal Chemistry with Macrocycles: Design, Synthesis and Case Studies.

Research output: Chapter in Book/Report/Conference proceedingChapter

Thiol-ene-enabled detection of thiophosphorylation as a labeling strategy for phosphoproteins

Wilke, K. E. & Carlson, E. E., Jan 1 2016, Methods in Molecular Biology. Humana Press Inc., p. 3-15 13 p. (Methods in Molecular Biology; vol. 1355).

Research output: Chapter in Book/Report/Conference proceedingChapter

Phosphoproteins
Sulfhydryl Compounds
Phosphotransferases
Phosphoric Monoester Hydrolases
Proteins
2015

[18F]Fluorination of (mesityl)(aryl)Iodonium Salts

Ichiishi, N., Brooks, A. F., Topczewski, J. J., Rodnick, M. E., Sanford, M. S. & Scott, P. J. H., May 8 2015, Further Radiopharmaceuticals for Positron Emission Tomography and New Strategies for Their Production. wiley, Vol. 2. p. 129-137 9 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Fluorination
Halogenation
Quality Control
Quality control
Salts
4 Citations (Scopus)

Group 8 Metal-Metal Bonds

Tereniak, S. J. & Lu, C. C., Jun 22 2015, Molecular Metal-Metal Bonds: Compounds, Synthesis, Properties. Wiley Blackwell, p. 225-278 54 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Metals
Coordination Complexes
Metal forming

In situ atomic resolution studies of the electrode/solution interface by electrochemical scanning tunneling microscopy

Thorgaard, S. N. & Buhlmann, P., Jan 1 2015, Nanoelectrochemistry. CRC Press, p. 695-747 53 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Scanning tunneling microscopy
Electrochemistry
Electrodes
Patents and inventions
Nanotechnology
7 Citations (Scopus)

Intermolecular Network Theory

Clark, A. E., 2015, Annual Reports in Computational Chemistry. Elsevier, Vol. 11. p. 313-359 47 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Citation (Scopus)

Investigating Interfacial Electron Transfer in Highly Efficient Porphyrin-Sensitized Solar Cells

Bowman, D. N., Chan, J. & Jakubikova, E., Jan 1 2015, Photoinduced Processes at Surfaces and in Nanomaterials. Kilin, D. (ed.). American Chemical Society, p. 169-188 20 p. (ACS Symposium Series; vol. 1196).

Research output: Chapter in Book/Report/Conference proceedingChapter

Porphyrins
Chromophores
Solar cells
Zinc
Coloring Agents

New Approaches to Understanding Bacterial Histidine Kinase Activity and Inhibition

Wilke, K. E. & Carlson, E. E., Oct 1 2015, Kinomics: Approaches and Applications. Wiley, p. 233-254 22 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Histidine
Phosphotransferases
Periplasmic Proteins
Membranes
Operon

Sustainability: GEOC's Perspective

Ilgen, A. G., Criscenti, L. J., Jun, Y. S., Taillefert, M., Kerisit, S. & Penn, L., Jan 1 2015, Teaching and Learning about Sustainability. Levy, I. J. & Middlecamp, C. H. (eds.). American Chemical Society, p. 105-117 13 p. (ACS Symposium Series; vol. 1205).

Research output: Chapter in Book/Report/Conference proceedingChapter

Geochemistry
Sustainable development
Acidification
Climate change
Agriculture
2 Citations (Scopus)

Synthetic models of 2-oxoglutarate-dependent oxygenases

Allpress, C. J., Kleespies, S. T. & Que, L., Jan 1 2015, 2-Oxoglutarate-Dependent Oxygenases. Hausinger, R. P. & Schofield, C. J. (eds.). 3 ed. Royal Society of Chemistry, p. 123-148 26 p. (RSC Metallobiology; vol. 2015-January, no. 3).

Research output: Chapter in Book/Report/Conference proceedingChapter

Oxygenases
Keto Acids
Enzymes
Oxygen
Ligands
24 Citations (Scopus)

Theoretical calculation of reduction potentials

Ho, J., Coote, M. L., Cramer, C. & Truhlar, D. G., Jan 1 2015, Organic Electrochemistry, Fifth Edition: Revised and Expanded. CRC Press, p. 229-260 32 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Antioxidants
Dehalogenation
Biochemistry
Cell death
Materials science
2014

Bis(1,2-Bis(Dimethylphosphano)Ethane)Tricarbonyltitanium(0) and Hexacarbonyltitanate(2-)

Jilek, R. E., Fischer, P. J., Ellis, J. E., Kilpatrick, A. F. R. & Cloke, F. G. N., May 12 2014, Inorganic Syntheses. Wiley Blackwell, Vol. 36. p. 129-136 8 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Ethane
Carbon Monoxide
Acetonitrile
Carbon monoxide
Potassium

Bis(η5-Pentamethylcyclopentadienyl) Complexes of Molybdenum

Shin, J. H., Churchill, D. G., Parkin, G., Roggan, S., Jankowski, C., Limberg, C., Tonks, I. & Bercaw, J., May 12 2014, Inorganic Syntheses. Wiley Blackwell, Vol. 36. p. 58-62 5 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Molybdenum
Organometallics
Hydrides
Derivatives
molybdenum chloride
12 Citations (Scopus)

Dioxygen activation by biomimetic iron complexes of α-keto acids and α-hydroxy acids

Paine, T. K. & Que, L., Jan 1 2014, Molecular Design in Inorganic Biochemistry. Springer Verlag, Vol. 160. p. 39-56 18 p. (Structure and Bonding; vol. 160).

Research output: Chapter in Book/Report/Conference proceedingChapter

Keto Acids
Hydroxy Acids
biomimetics
Biomimetics
Iron

Dioxygen Activation by Biomimetic Iron Complexes of α-Keto Acids and α-Hydroxy Acids

Paine, T. K. & Que, L., Jan 1 2014, Molecular Design in Inorganic Biochemistry. Springer- Verlag, p. 39-56 18 p. (Structure and Bonding; vol. 160).

Research output: Chapter in Book/Report/Conference proceedingChapter

Keto Acids
Hydroxy Acids
biomimetics
Biomimetics
Iron
2 Citations (Scopus)

Evaluation of prenylated peptides for use in cellular imaging and biochemical analysis

Ochocki, J. D., Igbavboa, U., Wood, W. G., Arriaga, E., Wattenberg, E. V. & Distefano, M. D., Jan 1 2014, Therapeutic Peptides: Methods and Protocols. Humana Press Inc., p. 213-223 11 p. (Methods in Molecular Biology; vol. 1088).

Research output: Chapter in Book/Report/Conference proceedingChapter

Protein Prenylation
Prenylation
Peptides
Dimethylallyltranstransferase
ras Proteins
3 Citations (Scopus)

Modeling metal-metal multiple bonds with multireference quantum chemical methods

Gagliardi, L., Jul 8 2014, The Chemical Bond: Chemical Bonding Across the Periodic Table. Wiley Blackwell, Vol. 9783527333158. p. 253-268 16 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Metals
Ligands
Quantum chemistry
Oxidation
Molecules

Molecular dynamics simulation of kinetic isotope effects in enzyme-catalyzed reactions

Gao, J., Mar 27 2014, Reaction Rate Constant Computations. Han, K. & Chu, T. (eds.). p. 530-549 20 p. (RSC Theoretical and Computational Chemistry Series).

Research output: Chapter in Book/Report/Conference proceedingChapter

Enzyme kinetics
Isotopes
Molecular dynamics
Enzymes
Kinetics
1 Citation (Scopus)

Quantum Chemical Characterization of Water Oxidation Catalysts

Miró, P., Ertem, M. Z., Gagliardi, L. & Cramer, C. J., Jun 3 2014, Molecular Water Oxidation Catalysis: A Key Topic for New Sustainable Energy Conversion Schemes. Wiley Blackwell, Vol. 9781118413371. p. 233-255 23 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Oxidation
Catalysts
Water
Iron
Ruthenium
4 Citations (Scopus)

Reactions of Square-Planar d8 Pincer Complexes with Oxygen and Hydrogen

Bailey, W. D., Parkes, M. V., Kemp, R. A. & Goldberg, K. I., Aug 25 2014, Pincer and Pincer-Type Complexes: Applications in Organic Synthesis and Catalysis. Wiley Blackwell, Vol. 9783527334421. p. 281-298 18 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Palladium
Hydrogen
Hydrogenolysis
Oxygen
Metals
2013
2 Citations (Scopus)

Barbed suture technology

Ingle, N. P., Cong, H. & King, M. W., Jan 1 2013, Biotextiles As Medical Implants. Elsevier Inc., p. 366-407 42 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Sutures
Technology
12 Citations (Scopus)

Cold-adapted yeasts in antarctic deserts

Connell, L. B., Rodriguez, R. R., Redman, R. S. & Dalluge, J., Aug 1 2013, Cold-adapted Yeasts: Biodiversity, Adaptation Strategies and Biotechnological Significance. Springer-Verlag Berlin Heidelberg, p. 75-98 24 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Yeasts
Ecosystem
Soil
Rhodotorula
Cryptococcus
8 Citations (Scopus)

Hydrocarbon Oxidations Catalyzed by Bio-Inspired Nonheme Iron and Copper Catalysts

Oloo, W. N. & Que, L., Aug 1 2013, Comprehensive Inorganic Chemistry II (Second Edition): From Elements to Applications. Elsevier Ltd, Vol. 6. p. 763-778 16 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Hydrocarbons
Copper
Iron
Oxidation
Catalysts
2 Citations (Scopus)

Macrocyclic Protease Inhibitors Constrained into a β-Strand Geometry

Pehere, A. D. & Abell, A. D., Jun 1 2013, Advances in Biochemistry in Health and Disease : Proteases in Health and Disease. Vol. Volume 7 . p. 181-192 11 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

4 Citations (Scopus)

One resin, multiple products: A green approach to purification

Mahajan, E., Werber, J., Kothary, K. & Larson, T., Mar 8 2013, Developments in Biotechnology and Bioprocessing. American Chemical Society, p. 87-111 25 p. (ACS Symposium Series; vol. 1125).

Research output: Chapter in Book/Report/Conference proceedingChapter

Staphylococcal Protein A
Purification
Resins
Proteins
Pilot plants
12 Citations (Scopus)

On the role of NMR spectroscopy for characterization of antimicrobial peptides

Porcelli, F., Ramamoorthy, A., Barany, G. & Veglia, G., Sep 20 2013, Membrane Proteins: Folding, Association, and Design. Ghirlanda, G. & Senes, A. (eds.). p. 159-180 22 p. (Methods in Molecular Biology; vol. 1063).

Research output: Chapter in Book/Report/Conference proceedingChapter

Magnetic Resonance Spectroscopy
Peptides
Lipids
Membranes
Eukaryotic Cells

Preparation and characterization of DNA block copolymer assemblies loaded with nanoparticles

Chen, X. J., Hickey, R. J. & Park, S. J., 2013, Nanomaterial Interfaces in Biology: Methods and Protocols. Humana Press Inc., p. 207-224 18 p. (Methods in Molecular Biology; vol. 1025).

Research output: Chapter in Book/Report/Conference proceedingChapter

Nanoparticles
DNA
Nanostructures
4 Citations (Scopus)

Small Molecule Models: Cu, Ni, Co

Halvagar, M. R., Salmon, D. J. & Tolman, W. B., Aug 1 2013, Comprehensive Inorganic Chemistry II (Second Edition): From Elements to Applications. Elsevier Ltd, Vol. 3. p. 455-486 32 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Chemical activation
Molecules
Carbon Monoxide
Catalysis
Substrates
2 Citations (Scopus)

Spectroscopy, photophysics and structural dynamics in metal-Centred species, some recent investigations: From spin-Crossover complexes and oxygen activation to photocatalysis

McGarvey, J. J., Draksharapu, A. & Browne, W. R., Nov 25 2013, Spectroscopic Properties of Inorganic and Organometallic Compounds. Yarwood, J., Douthwaite, R. & Duckett, S. (eds.). p. 68-94 27 p. (Spectroscopic Properties of Inorganic and Organometallic Compounds; vol. 44).

Research output: Chapter in Book/Report/Conference proceedingChapter

dynamic structural analysis
Photocatalysis
Structural dynamics
Biomimetics
crossovers
4 Citations (Scopus)

The adjuvant effect of emerging nanomaterials: A double-edged sword

Ren, H., Zhang, Q., Qie, L. & Baker, G. L., Oct 29 2013, Interactions of Nanomaterials with Emerging Environmental Contaminants. American Chemical Society, p. 3-21 19 p. (ACS Symposium Series; vol. 1150).

Research output: Chapter in Book/Report/Conference proceedingChapter

Nanostructured materials
Antigens
Nanoparticles
Consumer products
Particulate Matter
2012
19 Citations (Scopus)

Allylic substitutions catalyzed by miscellaneous metals

Begouin, J. M., Klein, J., Weickmann, D. & Plietker, B., Jan 1 2012, Transition Metal Catalyzed Enantioselective Allylic Substitution in Organic Synthesis. Kazmaier, U. (ed.). p. 269-320 52 p. (Topics in Organometallic Chemistry; vol. 38).

Research output: Chapter in Book/Report/Conference proceedingChapter

Regioselectivity
Substitution reactions
Metals
Transition metals
Substrates

Caging groups for cysteine: Synthesis and biological applications

Abate-Pella, D. & Distefano, M. D., Aug 1 2012, Cysteine: Biosynthesis, Chemical Structure and Toxicity. Nova Science Publishers, Inc., p. 155-171 17 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Biological Phenomena
Functional groups
Cysteine
Light
Covalent bonds
1 Citation (Scopus)

Molecular simulations of retention in chromatographic systems: Use of biased monte carlo techniques to access multiple time and length scales

Rafferty, J. L., Siepmann, J. I. & Schure, M. R., Jan 1 2012, Multiscale Molecular Methods in Applied Chemistry. Vol. 307. p. 181-200 20 p. (Topics in Current Chemistry; vol. 307).

Research output: Chapter in Book/Report/Conference proceedingChapter

Gases
Sampling
Liquids
Monte Carlo simulation
2 Citations (Scopus)

Nucleic Acid Delivery via Polymer Vehicles

Reineke, T. M. & Davis, M. E., Dec 1 2012, Polymer Science: A Comprehensive Reference, 10 Volume Set. Elsevier, Vol. 9. p. 497-527 31 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Nucleic Acids
Polymers
Mammals
Oligonucleotides
Small Interfering RNA
1 Citation (Scopus)

Polymer Synthesis

Hillmyer, M. A., Dec 1 2012, Polymer Science: A Comprehensive Reference, 10 Volume Set. Elsevier, Vol. 1. p. 31-45 15 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Polymerization
Polymers
Molecular weight distribution
Thermodynamics
Copolymers