Research Output

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Comment/debate
2019

Author Correction: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2 (Nature Biotechnology, (2019), 37, 8, (852-857), 10.1038/s41587-019-0209-9)

Bolyen, E., Rideout, J. R., Dillon, M. R., Bokulich, N. A., Abnet, C. C., Al-Ghalith, G. A., Alexander, H., Alm, E. J., Arumugam, M., Asnicar, F., Bai, Y., Bisanz, J. E., Bittinger, K., Brejnrod, A., Brislawn, C. J., Brown, C. T., Callahan, B. J., Caraballo-Rodríguez, A. M., Chase, J., Cope, E. K. & 92 others, Da Silva, R., Diener, C., Dorrestein, P. C., Douglas, G. M., Durall, D. M., Duvallet, C., Edwardson, C. F., Ernst, M., Estaki, M., Fouquier, J., Gauglitz, J. M., Gibbons, S. M., Gibson, D. L., Gonzalez, A., Gorlick, K., Guo, J., Hillmann, B., Holmes, S., Holste, H., Huttenhower, C., Huttley, G. A., Janssen, S., Jarmusch, A. K., Jiang, L., Kaehler, B. D., Kang, K. B., Keefe, C. R., Keim, P., Kelley, S. T., Knights, D., Koester, I., Kosciolek, T., Kreps, J., Langille, M. G. I., Lee, J., Ley, R., Liu, Y. X., Loftfield, E., Lozupone, C., Maher, M., Marotz, C., Martin, B. D., McDonald, D., McIver, L. J., Melnik, A. V., Metcalf, J. L., Morgan, S. C., Morton, J. T., Naimey, A. T., Navas-Molina, J. A., Nothias, L. F., Orchanian, S. B., Pearson, T., Peoples, S. L., Petras, D., Preuss, M. L., Pruesse, E., Rasmussen, L. B., Rivers, A., Robeson, M. S., Rosenthal, P., Segata, N., Shaffer, M., Shiffer, A., Sinha, R., Song, S. J., Spear, J. R., Swafford, A. D., Thompson, L. R., Torres, P. J., Trinh, P., Tripathi, A., Turnbaugh, P. J., Ul-Hasan, S., van der Hooft, J. J. J., Vargas, F., Vázquez-Baeza, Y., Vogtmann, E., von Hippel, M., Walters, W., Wan, Y., Wang, M., Warren, J., Weber, K. C., Williamson, C. H. D., Willis, A. D., Xu, Z. Z., Zaneveld, J. R., Zhang, Y., Zhu, Q., Knight, R. & Caporaso, J. G., Sep 1 2019, In : Nature biotechnology. 37, 9, 1 p.

Research output: Contribution to journalComment/debate

Open Access
2 Scopus citations
2018
Open Access
2017

A Microbiome Foundation for the Study of Crohn's Disease

Gevers, D., Kugathasan, S., Knights, D., Kostic, A. D., Knight, R. & Xavier, R. J., Mar 8 2017, In : Cell Host and Microbe. 21, 3, p. 301-304 4 p.

Research output: Contribution to journalComment/debate

Open Access
16 Scopus citations
2016
1 Scopus citations

Erratum to: Pretreatment gut microbiome predicts chemotherapy-related bloodstream infection Genome Medicine 8, (2016) 61]

Montassier, E., Al-Ghalith, G. A., Ward, T., Corvec, S., Gastinne, T., Potel, G., Moreau, P., De La Cochetiere, M. F., Batard, E. & Knights, D., May 26 2016, In : Genome medicine. 8, 1, 61.

Research output: Contribution to journalComment/debate

Open Access
2 Scopus citations

Inside view

Hajimorad, M. & Gralnick, J., Mar 17 2016, In : Electronics Letters. 52, 6, 1 p.

Research output: Contribution to journalComment/debate

2014

Advancing the microbiome research community

Huttenhower, C., Knight, R., Brown, C. T., Caporaso, J. G., Clemente, J. C., Gevers, D., Franzosa, E. A., Kelley, S. T., Knights, D., Ley, R. E., Mahurkar, A., Ravel, J. & White, O., Oct 9 2014, In : Cell. 159, 2, p. 227-230 4 p.

Research output: Contribution to journalComment/debate

35 Scopus citations

Rethinking enterotypes

Knights, D., Ward, T. L., McKinlay, C. E., Miller, H., Gonzalez, A., McDonald, D. & Knight, R., Oct 8 2014, In : Cell Host and Microbe. 16, 4, p. 433-437 5 p.

Research output: Contribution to journalComment/debate

176 Scopus citations
2012

Draft genome sequence of Escherichia coli AI27, a porcine isolate belonging to phylogenetic group B1

Lee, K., Yi, H., Cho, Y. J., Jang, J., Hur, H. G. & Chun, J., Dec 1 2012, In : Journal of bacteriology. 194, 23, p. 6640-6641 2 p.

Research output: Contribution to journalComment/debate

Draft genome sequence of Escherichia coli W26, an enteric strain isolated from cow feces

Kim, M., Yi, H., Cho, Y. J., Jang, J., Hur, H. G. & Chun, J., Sep 1 2012, In : Journal of bacteriology. 194, 18, p. 5149-5150 2 p.

Research output: Contribution to journalComment/debate

3 Scopus citations
2011

Human-associated microbial signatures: Examining their predictive value

Knights, D., Parfrey, L. W., Zaneveld, J., Lozupone, C. & Knight, R., Oct 4 2011, In : Cell Host and Microbe. 10, 4, p. 292-296 5 p.

Research output: Contribution to journalComment/debate

67 Scopus citations

New non-quinone geldanamycin analogs from genetically engineered Streptomyces hygroscopicus

Wu, C. Z., Moon, A. N., Jang, J. H., Lee, D., Kang, S. Y., Park, J. T., Ahn, J. S., Hwang, B. Y., Kim, Y. H., Lee, H. S. & Hong, Y. S., Jun 1 2011, In : Journal of Antibiotics. 64, 6, p. 461-463 3 p.

Research output: Contribution to journalComment/debate

11 Scopus citations

Supervised classification of microbiota mitigates mislabeling errors

Knights, D., Kuczynski, J., Koren, O., Ley, R. E., Field, D., Knight, R., Desantis, T. Z. & Kelley, S. T., Apr 1 2011, In : ISME Journal. 5, 4, p. 570-573 4 p.

Research output: Contribution to journalComment/debate

19 Scopus citations

UniFrac: An effective distance metric for microbial community comparison

Lozupone, C., Lladser, M. E., Knights, D., Stombaugh, J. & Knight, R., Feb 1 2011, In : ISME Journal. 5, 2, p. 169-172 4 p.

Research output: Contribution to journalComment/debate

915 Scopus citations

The future of molecular evolution

Dean, A. M., Jun 1 2010, In : EMBO Reports. 11, 6, 1 p.

Research output: Contribution to journalComment/debate

1 Scopus citations

Finding better protein engineering strategies

Kazlauskas, R. J. & Bornscheuer, U. T., Aug 2009, In : Nature Chemical Biology. 5, 8, p. 526-529 4 p.

Research output: Contribution to journalComment/debate

141 Scopus citations
2003

Erratum: Structural and interactional homology of clinically potential typsin inhibitors: Molecular modelling of cucurbitaceae family peptides using the X-ray structure of MCTI-II (Protein Engineering (2000) 13 (551-555))

Chakraborty, S., Bhattacharya, S., Ghosh, S., Bera, A. K., Haldar, U., Pal, A. K., Mukhopadhyay, B. P. & Banerjee, A., Mar 1 2003, In : Protein Engineering. 16, 3, 1 p.

Research output: Contribution to journalComment/debate

1993

Biocatalysis - becoming more predictable and selective

Kazlauskas, R. J., Nov 1993, In : Trends in Biotechnology. 11, 11, p. 439-440 2 p.

Research output: Contribution to journalComment/debate

8 Scopus citations