Biochemistry, Molecular Biology, and Biophysics (TMED)

2004

SERCA structural dynamics induced by ATP and calcium

Mueller, B., Zhao, M., Negrashov, I. V., Bennett, R. & Thomas, D. D., Oct 12 2004, In: Biochemistry. 43, 40, p. 12846-12854 9 p.

Research output: Contribution to journal › Article › peer-review

23 Scopus citations

Single-turnover kinetics of homoprotocatechuate 2,3-dioxygenase

Groce, S. L., Miller-Rodeberg, M. A. & Lipscomb, J. D., Dec 7 2004, In: Biochemistry. 43, 48, p. 15141-15153 13 p.

Research output: Contribution to journal › Article › peer-review

52 Scopus citations

Smoking behaviour and toxin exposure during six weeks use of a potential reduced exposure product: Omni

Hughes, J. R., Hecht, S. S., Carmella, S. G., Murphy, S. E. & Callas, P., Jun 2004, In: Tobacco control. 13, 2, p. 175-179 5 p.

Research output: Contribution to journal › Article › peer-review

27 Scopus citations

Solution structure of Cu₆ metallothionein from the fungus Neurospora crassa

Cobine, P. A., McKay, R. T., Zangger, K., Dameron, C. T. & Armitage, I. M., Nov 2004, In: European Journal of Biochemistry. 271, 21, p. 4213-4221 9 p.

Research output: Contribution to journal › Article › peer-review

36 Scopus citations

Spatiotemporal Regulation of the Two Atrial Natriuretic Peptide Receptors in Testis

Müller, D., Mukhopadhyay, A. K., Speth, R. C., Guidone, G., Potthast, R., Potter, L. R. & Middendorff, R., Mar 2004, In: Endocrinology. 145, 3, p. 1392-1401 10 p.

Research output: Contribution to journal › Article › peer-review

28 Scopus citations

Sphingosine-1-Phosphate Inhibits C-Type Natriuretic Peptide Activation of Guanylyl Cyclase B (GC-B/NPR-B)

Abbey-Hosch, S. E., Cody, A. N. & Potter, L. R., May 2004, In: Hypertension. 43, 5, p. 1103-1109 7 p.

Research output: Contribution to journal › Article › peer-review

33 Scopus citations

Structural dynamics of actin during active interaction with myosin: Different effects of weakly and strongly bound myosin heads

Prochniewicz, E., Walseth, T. F. & Thomas, D. D., Aug 24 2004, In: Biochemistry. 43, 33, p. 10642-10652 11 p.

Research output: Contribution to journal › Article › peer-review

69 Scopus citations

Structural Studies of the Manganese Stabilizing Subunit in Photosystem II

Svensson, B., Tiede, D. M., Nelson, D. R. & Barry, B. A., Mar 2004, In: Biophysical journal. 86, 3, p. 1807-1812 6 p.

Research output: Contribution to journal › Article › peer-review

Open Access

16 Scopus citations

Structure/function studies of an endotoxin-neutralizing peptide derived from bactericidal/permeability-increasing protein

Wasiluk, K. R., Leslie, D. B., Vietzen, P. S., Mayo, K. H. & Dunn, D. L., Aug 2004, In: Surgery. 136, 2, p. 253-260 8 p.

Research output: Contribution to journal › Article › peer-review

11 Scopus citations

The structure-specific endonuclease Ercc1-Xpf is required to resolve DNA interstrand cross-link-induced double-strand breaks

Niedernhofer, L. J., Odijk, H., Budzowska, M., Van Drunen, E., Maas, A., Theil, A. F., De Wit, J., Jaspers, N. G. J., Beverloo, H. B., Hoeijmakers, J. H. J. & Kanaar, R., Jul 2004, In: Molecular and cellular biology. 24, 13, p. 5776-5787 12 p.

Research output: Contribution to journal › Article › peer-review

Open Access

437 Scopus citations

The Time-Dependent Distribution of Phosphorylated Intermediates in Native Sarcoplasmic Reticulum Ca ²⁺-ATPase from Skeletal Muscle Is Not Compatible with a Linear Kinetic Model

Mahaney, J. E., Thomas, D. D. & Froehlich, J. P., Apr 13 2004, In: Biochemistry. 43, 14, p. 4400-4416 17 p.

Research output: Contribution to journal › Article › peer-review

17 Scopus citations

The Yeast Splicing Factor Prp40p Contains Functional Leucine-Rich Nuclear Export Signals that are Essential for Splicing

Murphy, M. W., Olson, B. L. & Siliciano, P. G., Jan 2004, In: Genetics. 166, 1, p. 53-65 13 p.

Research output: Contribution to journal › Article › peer-review

Open Access

17 Scopus citations

The zebrafish metaxin 3 gene (mtx3): cDNA and protein structure, and comparison to zebrafish metaxins 1 and 2

Adolph, K. W., Apr 14 2004, In: Gene. 330, 1-2, p. 67-73 7 p.

Research output: Contribution to journal › Article › peer-review

2 Scopus citations

Transcriptional Activation by the Zinc-Finger Homeodomain Protein δEF1 in Estrogen Signaling Cascades

Dillner, N. B. & Sanders, M. M., Jan 2004, In: DNA and Cell Biology. 23, 1, p. 25-34 10 p.

Research output: Contribution to journal › Article › peer-review

24 Scopus citations

TROSY-based correlation and NOE spectroscopy for NMR structural studies of large proteins.

Zhu, G., Xia, Y., Lin, D. & Gao, X., Oct 11 2004, In: Methods in molecular biology (Clifton, N.J.). 278, p. 57-78 22 p.

Research output: Contribution to journal › Article › peer-review

8 Scopus citations

TROSY-based NMR experiments for the study of macromolecular dynamics and hydrogen bonding.

Zhu, G., Xia, Y., Lin, D. & Gao, X., 2004, In: Methods in molecular biology (Clifton, N.J.). 278, p. 161-184 24 p.

Research output: Contribution to journal › Article › peer-review

5 Scopus citations

2003

¹⁵NH backbone dynamics of protein GB1: Comparison of order parameters and correlation times derived using various "model-free" approaches

Idiyatullin, D. S., Daragan, V. A. & Mayo, K. H., Mar 20 2003, In: Journal of Physical Chemistry B. 107, 11, p. 2602-2609 8 p.

Research output: Contribution to journal › Article › peer-review

20 Scopus citations

¹H_C and ¹H_N total NOE correlations in a single 3D NMR experiment. ¹⁵N and ¹³C time-sharing in t₁ and t₂ dimensions for simultaneous data acquisition

Xia, Y., Yee, A., Arrowsmith, C. H. & Gao, X., Nov 1 2003, In: Journal of biomolecular NMR. 27, 3, p. 193-203 11 p.

Research output: Contribution to journal › Article › peer-review

30 Scopus citations

Abundance ratio-dependent proteomic analysis by mass spectrometry

Griffin, T. J., Lock, C. M., Li, X. J., Patel, A., Chervetsova, I., Lee, H., Wright, M. E., Ranish, J. A., Chen, S. S. & Aebersold, R., Feb 15 2003, In: Analytical Chemistry. 75, 4, p. 867-874 8 p.

Research output: Contribution to journal › Article › peer-review

58 Scopus citations

A diverse set of nuclear RNAs transfer between nuclei of yeast heterokaryons

Olson, B. L. & Siliciano, P. G., Jul 2003, In: Yeast. 20, 10, p. 893-903 11 p.

Research output: Contribution to journal › Article › peer-review

13 Scopus citations

Anti-tumor activity of the novel angiogenesis inhibitor anginex

Dings, R. P. M., Van Der Schaft, D. W. J., Hargittai, B., Haseman, J., Griffioen, A. W. & Mayo, K. H., May 8 2003, In: Cancer Letters. 194, 1, p. 55-66 12 p.

Research output: Contribution to journal › Article › peer-review

64 Scopus citations

Biochemical and spectroscopic studies on (S)-2-hydroxypropylphosphonic acid epoxidase: A novel mononuclear non-heme iron enzyme

Liu, P., Liu, A., Yan, F., Wolfe, M. D., Lipscomb, J. D. & Liu, H. W., Oct 14 2003, In: Biochemistry. 42, 40, p. 11577-11586 10 p.

Research output: Contribution to journal › Article › peer-review

47 Scopus citations

Calmodulin oxidation and methionine to glutamine substitutions reveal methionine residues critical for functional interaction with ryanodine receptor-1

Balog, E. M., Norton, L. E., Bloomquist, R. A., Cornea, R. L., Black, D. J., Louis, C. F., Thomas, D. D. & Fruen, B. R., May 2 2003, In: Journal of Biological Chemistry. 278, 18, p. 15615-15621 7 p.

Research output: Contribution to journal › Article › peer-review

42 Scopus citations

Characterization and cDNA cloning of an immune-induced lysozyme from cultured Aedes albopictus mosquito cells

Hernandez, V. P., Higgins, L. & Fallon, A. M., Jan 2003, In: Developmental and Comparative Immunology. 27, 1, p. 11-20 10 p.

Research output: Contribution to journal › Article › peer-review

13 Scopus citations

Comparative metabolism of N-nitrosopiperidine and N-nitrosopyrrolidine by rat liver and esophageal microsomes and cytochrome P450 2A3

Wong, H. L., Murphy, S. E., Wang, M. & Hecht, S. S., Feb 1 2003, In: Carcinogenesis. 24, 2, p. 291-300 10 p.

Research output: Contribution to journal › Article › peer-review

41 Scopus citations

Comparative metabolism of the tobacco-specific nitrosamines 4-(methylnitrosamino)-1-(3-pyridyl)-1-butanone and 4-(methylnitrosamino)-1-(3-pyridyl)-1-butanol by rat cytochrome P450 2A3 and human cytochrome P450 2A13

Jalas, J. R., Ding, X. & Murphy, S. E., Oct 1 2003, In: Drug Metabolism and Disposition. 31, 10, p. 1199-1202 4 p.

Research output: Contribution to journal › Article › peer-review

67 Scopus citations

Comparison of ¹³C_αH and ¹⁵NH backbone dynamics in protein GB1

Idiyatullin, D., Nesmelova, I., Daragan, V. A. & Mayo, K. H., May 1 2003, In: Protein Science. 12, 5, p. 914-922 9 p.

Research output: Contribution to journal › Article › peer-review

Open Access

14 Scopus citations

Complete genome sequence and analysis of Wolinella succinogenes

Baar, C., Eppinger, M., Raddatz, G., Simon, J., Lanz, C., Klimmek, O., Nandakumar, R., Gross, R., Rosinus, A., Keller, H., Jagtap, P., Linke, B., Meyer, F., Lederer, H. & Schuster, S. C., Sep 30 2003, In: Proceedings of the National Academy of Sciences of the United States of America. 100, 20, p. 11690-11695 6 p.

Research output: Contribution to journal › Article › peer-review

173 Scopus citations

Conformational preferences of the amylin nucleation site in SDS micelles: An NMR study

Mascioni, A., Porcelli, F., Ilangovan, U., Ramamoorthy, A. & Veglia, G., May 2003, In: Biopolymers. 69, 1, p. 29-41 13 p.

Research output: Contribution to journal › Article › peer-review

56 Scopus citations

Conversion of extradiol aromatic ring-cleaving homoprotocatechuate 2,3-dioxygenase into an intradiol cleaving enzyme

Groce, S. L. & Lipscomb, J. D., Oct 1 2003, In: Journal of the American Chemical Society. 125, 39, p. 11780-11781 2 p.

Research output: Contribution to journal › Article › peer-review

48 Scopus citations

Core 1 Glycans on α-Dystroglycan Mediate Laminin-induced Acetylcholine Receptor Clustering but Not Laminin Binding

McDearmon, E. L., Combs, A. C. & Ervasti, J. M., Nov 7 2003, In: Journal of Biological Chemistry. 278, 45, p. 44868-44873 6 p.

Research output: Contribution to journal › Article › peer-review

32 Scopus citations

CYP2A13-catalysed coumarin metabolism: Comparison with CYP2A5 and CYP2A6

Von Weymarn, L. B. & Murphy, S. E., Jan 1 2003, In: Xenobiotica. 33, 1, p. 73-81 9 p.

Research output: Contribution to journal › Article › peer-review

45 Scopus citations

Dealkylation of Organotin Compounds by Biological Dithiols: Toward the Chemistry of Organotin Toxicity

Buck, B., Mascioni, A., Que, L. & Veglia, G., Nov 5 2003, In: Journal of the American Chemical Society. 125, 44, p. 13316-13317 2 p.

Research output: Contribution to journal › Article › peer-review

44 Scopus citations

Defining the molecular components of calcium transport regulation in a reconstituted membrane system

Reddy, L. G., Cornea, R. L., Winters, D. L., McKenna, E. & Thomas, D. D., Apr 22 2003, In: Biochemistry. 42, 15, p. 4585-4592 8 p.

Research output: Contribution to journal › Article › peer-review

52 Scopus citations

Design of a Partial Peptide Mimetic of Anginex with Antiangiogenic and Anticancer Activity

Mayo, K. H., Dings, R. P. M., Flader, C., Nesmelova, I., Hargittai, B., Van Der Schaft, D. W. J., Van Eijk, L. I., Walek, D., Haseman, J., Hoye, T. R. & Griffioen, A. W., Nov 14 2003, In: Journal of Biological Chemistry. 278, 46, p. 45746-45752 7 p.

Research output: Contribution to journal › Article › peer-review

65 Scopus citations

Dipolar waves map the structure and topology of helices in membrane proteins

Mesleh, M. F., Lee, S., Veglia, G., Thiriot, D. S., Marassi, F. M. & Opella, S. J., Jul 23 2003, In: Journal of the American Chemical Society. 125, 29, p. 8928-8935 8 p.

Research output: Contribution to journal › Article › peer-review

Open Access

90 Scopus citations

Effector proteins from P450_cam and methane monooxygenase: Lessons in tuning nature's powerful reagents

Brazeau, B. J., Wallar, B. J. & Lipscomb, J. D., Dec 5 2003, In: Biochemical and Biophysical Research Communications. 312, 1, p. 143-148 6 p.

Research output: Contribution to journal › Article › peer-review

31 Scopus citations

Effects of long chain fatty acids on lipid and glucose metabolism in monolayer cultures of bovine hepatocytes

Mashek, D. G. & Grummer, R. R., Jul 2003, In: Journal of Dairy Science. 86, 7, p. 2390-2396 7 p.

Research output: Contribution to journal › Article › peer-review

Open Access

66 Scopus citations

Effects of nicotine infusion on the metabolism of the tobacco carcinogen 4-(methylnitrosamino)-1-(3-pyridyl)-1-butanone (NNK) in rats

Keyler, D., Pentel, P. R., Kuehl, G., Collins, G. & Murphy, S. E., Dec 8 2003, In: Cancer Letters. 202, 1, p. 1-9 9 p.

Research output: Contribution to journal › Article › peer-review

12 Scopus citations

Expression of a soluble transforming growth factor-β (TGFβ) receptor reduces tumorigenicity by regulating natural killer (NK) cell activity against 9L gliosarcoma in vivo

Witham, T. F., Villa, L., Yang, T., Pollack, I. F., Okada, H., Robbins, P. D. & Chambers, W. H., Aug 1 2003, In: Journal of neuro-oncology. 64, 1-2, p. 63-69 7 p.

Research output: Contribution to journal › Article › peer-review

22 Scopus citations

GβL, a positive regulator of the rapamycin-sensitive pathway required for the nutrient-sensitive interaction between raptor and mTOR

Kim, D. H., Sarbassov, D. D., Ali, S. M., Latek, R. R., Guntur, K. V. P., Erdjument-Bromage, H., Tempst, P. & Sabatini, D. M., Apr 1 2003, In: Molecular Cell. 11, 4, p. 895-904 10 p.

Research output: Contribution to journal › Article › peer-review

825 Scopus citations

Heat capacities and a snapshot of the energy landscape in protein GB1 from the pre-denaturation temperature dependence of backbone NH nanosecond fluctuations

Idiyatullin, D., Nesmelova, I., Daragan, V. A. & Mayo, K. H., 2003, In: Journal of Molecular Biology. 325, 1, p. 149-162 14 p.

Research output: Contribution to journal › Article › peer-review

35 Scopus citations

Helix 6 of tBid is necessary but not sufficient for mitochondrial binding activity

Hu, X., Han, Z., Wyche, J. H. & Hendrickson, E. A., Jun 2003, In: Apoptosis. 8, 3, p. 277-289 13 p.

Research output: Contribution to journal › Article › peer-review

25 Scopus citations

Human CD4+ T-cell epitope repertoire on the C2 domain of coagulation factor VIII

Reding, M. T., Okita, D. K., Dlethelaa-Okita, B. M., Anderson, T. A. & Conti-Fine, B. M., Aug 2003, In: Journal of Thrombosis and Haemostasis. 1, 8, p. 1777-1784 8 p.

Research output: Contribution to journal › Article › peer-review

Open Access

90 Scopus citations

Hydrogen peroxide-coupled cis-diol formation catalyzed by naphthalene 1,2-dioxygenase

Wolfe, M. D. & Lipscomb, J. D., Jan 10 2003, In: Journal of Biological Chemistry. 278, 2, p. 829-835 7 p.

Research output: Contribution to journal › Article › peer-review

119 Scopus citations

Identification of a synovial fibroblast-specific protein transduction domain for delivery of apoptotic agents to hyperplastic synovium

Mi, Z., Lu, X., Mai, J. C., Ng, B. G., Wang, G., Lechman, E. R., Watkins, S. C., Rabinowich, H. & Robbins, P. D., Aug 1 2003, In: Molecular Therapy. 8, 2, p. 295-305 11 p.

Research output: Contribution to journal › Article › peer-review

65 Scopus citations

Investigation of the stability of yeast RAD52 mutant proteins uncovers post-translational and transcriptional regulation of RAD52p

Asleson, E. N. & Livingston, D. M., Jan 1 2003, In: Genetics. 163, 1, p. 91-101 11 p.

Research output: Contribution to journal › Article › peer-review

12 Scopus citations

Key amino acid residues in the regulation of soluble methane monooxygenase catalysis by component B

Brazeau, B. J. & Lipscomb, J. D., May 20 2003, In: Biochemistry. 42, 19, p. 5618-5631 14 p.

Research output: Contribution to journal › Article › peer-review

45 Scopus citations

Lysophosphatidic acid inhibits C-type natriuretic peptide activation of guanylyl cyclase-B

Abbey, S. E. & Potter, L. R., Jan 1 2003, In: Endocrinology. 144, 1, p. 240-246 7 p.

Research output: Contribution to journal › Article › peer-review

42 Scopus citations

Metabolites of a Tobacco-Specific Lung Carcinogen in Nonsmoking Casino Patrons

Anderson, K. E., Kliris, J., Murphy, L., Carmella, S. G., Han, S., Link, C., Bliss, R. L., Puumala, S., Murphy, S. E. & Hecht, S. S., Dec 2003, In: Cancer Epidemiology Biomarkers and Prevention. 12, 12, p. 1544-1546 3 p.

Research output: Contribution to journal › Article › peer-review

44 Scopus citations

Biochemistry, Molecular Biology, and Biophysics (TMED)

Research output

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