Biochemistry, Molecular Biology, and Biophysics (CBS)

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Review article
2020

High throughput sequencing of: In vitro selections of mRNA-displayed peptides: Data analysis and applications

Blanco, C., Verbanic, S., Seelig, B. & Chen, I. A., Mar 28 2020, In : Physical Chemistry Chemical Physics. 22, 12, p. 6492-6506 15 p.

Research output: Contribution to journalReview article

Open Access

In Vitro Selection of Peptides and Proteins-Advantages of mRNA Display

Newton, M. S., Cabezas-Perusse, Y., Tong, C. L. & Seelig, B., Feb 21 2020, In : ACS Synthetic Biology. 9, 2, p. 181-190 10 p.

Research output: Contribution to journalReview article

2019

Biological control of invasive fish and aquatic invertebrates: A brief review with case studies

Bajer, P. G., Ghosal, R., Maselko, M., Smanski, M. J., Lechelt, J. D., Hansen, G. & Kornis, M. S., Jun 2019, In : Management of Biological Invasions. 10, 2, p. 227-254 28 p.

Research output: Contribution to journalReview article

Open Access

Biosynthesis and chemical diversity of β-lactone natural products

Robinson, S. L., Christenson, J. K. & Wackett, L. P., Mar 2019, In : Natural Product Reports. 36, 3, p. 458-475 18 p.

Research output: Contribution to journalReview article

17 Scopus citations
2018

APOBEC Enzymes as Targets for Virus and Cancer Therapy

Olson, M. E., Harris, R. S. & Harki, D. A., Jan 18 2018, In : Cell Chemical Biology. 25, 1, p. 36-49 14 p.

Research output: Contribution to journalReview article

Open Access
26 Scopus citations

Calprotectin and the Initiation and Progression of Head and Neck Cancer

Argyris, P. P., Slama, Z. M., Ross, K. F., Khammanivong, A. & Herzberg, M. C., Jun 1 2018, In : Journal of dental research. 97, 6, p. 674-682 9 p.

Research output: Contribution to journalReview article

Open Access
8 Scopus citations
Open Access
1 Scopus citations

Interference in bacterial quorum sensing: A biopharmaceutical perspective

Rémy, B., Mion, S., Plener, L., Elias, M., Chabrière, E. & Daudé, D., Mar 7 2018, In : Frontiers in Pharmacology. 9, MAR, 203.

Research output: Contribution to journalReview article

Open Access
38 Scopus citations

Perspective: APOBEC mutagenesis in drug resistance and immune escape in HIV and cancer evolution

Venkatesan, S., Rosenthal, R., Kanu, N., McGranahan, N., Bartek, J., Quezada, S. A., Hare, J., Harris, R. S. & Swanton, C., Mar 1 2018, In : Annals of Oncology. 29, 3, p. 563-572 10 p.

Research output: Contribution to journalReview article

Open Access
33 Scopus citations

Probing protein-protein interactions using asymmetric labeling and carbonyl-carbon selective heteronuclear NMR spectroscopy

Larsen, E. K., Olivieri, C., Walker, C., Manu, V. S., Gao, J., Bernlohr, D. A., Tonelli, M., Markley, J. L. & Veglia, G., Jan 1 2018, In : Molecules. 23, 8, 1937.

Research output: Contribution to journalReview article

Open Access
3 Scopus citations
2017

Alternative polyadenylation in human diseases

Chang, J. W., Yeh, H. S. & Yong, J., Dec 1 2017, In : Endocrinology and Metabolism. 32, 4, p. 413-421 9 p.

Research output: Contribution to journalReview article

Open Access
8 Scopus citations

European contribution to the study of ROS: A summary of the findings and prospects for the future from the COST action BM1203 (EU-ROS)

Egea, J., Fabregat, I., Frapart, Y. M., Ghezzi, P., Görlach, A., Kietzmann, T., Kubaichuk, K., Knaus, U. G., Lopez, M. G., Olaso-Gonzalez, G., Petry, A., Schulz, R., Vina, J., Winyard, P., Abbas, K., Ademowo, O. S., Afonso, C. B., Andreadou, I., Antelmann, H., Antunes, F. & 131 others, Aslan, M., Bachschmid, M. M., Barbosa, R. M., Belousov, V., Berndt, C., Bernlohr, D., Bertrán, E., Bindoli, A., Bottari, S. P., Brito, P. M., Carrara, G., Casas, A. I., Chatzi, A., Chondrogianni, N., Conrad, M., Cooke, M. S., Costa, J. G., Cuadrado, A., My-Chan Dang, P., De Smet, B., Debelec-Butuner, B., Dias, I. H. K., Dunn, J. D., Edson, A. J., El Assar, M., El-Benna, J., Ferdinandy, P., Fernandes, A. S., Fladmark, K. E., Förstermann, U., Giniatullin, R., Giricz, Z., Görbe, A., Griffiths, H., Hampl, V., Hanf, A., Herget, J., Hernansanz-Agustín, P., Hillion, M., Huang, J., Ilikay, S., Jansen-Dürr, P., Jaquet, V., Joles, J. A., Kalyanaraman, B., Kaminskyy, D., Karbaschi, M., Kleanthous, M., Klotz, L. O., Korac, B., Korkmaz, K. S., Koziel, R., Kračun, D., Krause, K. H., Křen, V., Krieg, T., Laranjinha, J., Lazou, A., Li, H., Martínez-Ruiz, A., Matsui, R., McBean, G. J., Meredith, S. P., Messens, J., Miguel, V., Mikhed, Y., Milisav, I., Milković, L., Miranda-Vizuete, A., Mojović, M., Monsalve, M., Mouthuy, P. A., Mulvey, J., Münzel, T., Muzykantov, V., Nguyen, I. T. N., Oelze, M., Oliveira, N. G., Palmeira, C. M., Papaevgeniou, N., Pavićević, A., Pedre, B., Peyrot, F., Phylactides, M., Pircalabioru, G. G., Pitt, A. R., Poulsen, H. E., Prieto, I., Rigobello, M. P., Robledinos-Antón, N., Rodríguez-Mañas, L., Rolo, A. P., Rousset, F., Ruskovska, T., Saraiva, N., Sasson, S., Schröder, K., Semen, K., Seredenina, T., Shakirzyanova, A., Smith, G. L., Soldati, T., Sousa, B. C., Spickett, C. M., Stancic, A., Stasia, M. J., Steinbrenner, H., Stepanić, V., Steven, S., Tokatlidis, K., Tuncay, E., Turan, B., Ursini, F., Vacek, J., Vajnerova, O., Valentová, K., Van Breusegem, F., Varisli, L., Veal, E. A., Yalçın, A. S., Yelisyeyeva, O., Žarković, N., Zatloukalová, M., Zielonka, J., Touyz, R. M., Papapetropoulos, A., Grune, T., Lamas, S., Schmidt, H. H. H. W., Di Lisa, F. & Daiber, A., Oct 2017, In : Redox Biology. 13, p. 94-162 69 p.

Research output: Contribution to journalReview article

Open Access
104 Scopus citations

La décontamination des organophosphorés : vers de nouvelles alternatives

Translated title of the contribution: Decontamination of organophosphorus compounds: Towards new alternativesPoirier, L., Jacquet, P., Elias, M., Daudé, D. & Chabrière, E., May 2017, In : Annales Pharmaceutiques Francaises. 75, 3, p. 209-226 18 p.

Research output: Contribution to journalReview article

4 Scopus citations

NMR Studies of Large Proteins

Jiang, Y. & Kalodimos, C., Aug 18 2017, In : Journal of Molecular Biology. 429, 17, p. 2667-2676 10 p.

Research output: Contribution to journalReview article

22 Scopus citations

Structures of Large Protein Complexes Determined by Nuclear Magnetic Resonance Spectroscopy

Huang, C. & Kalodimos, C. G., May 22 2017, In : Annual Review of Biophysics. 46, p. 317-336 20 p.

Research output: Contribution to journalReview article

25 Scopus citations
2016

A community resource of experimental data for NMR / X-ray crystal structure pairs

Everett, J. K., Tejero, R., Murthy, S. B. K., Acton, T. B., Aramini, J. M., Baran, M. C., Benach, J., Cort, J. R., Eletsky, A., Forouhar, F., Guan, R., Kuzin, A. P., Lee, H. W., Liu, G., Mani, R., Mao, B., Mills, J. L., Montelione, A. F., Pederson, K., Powers, R. & 16 others, Ramelot, T., Rossi, P., Seetharaman, J., Snyder, D., Swapna, G. V. T., Vorobiev, S. M., Wu, Y., Xiao, R., Yang, Y., Arrowsmith, C. H., Hunt, J. F., Kennedy, M. A., Prestegard, J. H., Szyperski, T., Tong, L. & Montelione, G. T., Jan 1 2016, In : Protein Science. 25, 1, p. 30-45 16 p.

Research output: Contribution to journalReview article

Open Access
6 Scopus citations

Alternative polyadenylation of mRNAs: 3'-untranslated region matters in gene expression

Yeh, H. S. & Yong, J., Apr 1 2016, In : Molecules and cells. 39, 4, p. 281-285 5 p.

Research output: Contribution to journalReview article

Open Access
15 Scopus citations

Biocatalytic portfolio of Basidiomycota

Schmidt-Dannert, C., Apr 1 2016, In : Current opinion in chemical biology. 31, p. 40-49 10 p.

Research output: Contribution to journalReview article

15 Scopus citations

Des enzymes pour bloquer la communication bactérienne, une alternative aux antibiotiques ?

Translated title of the contribution: Enzymes for disrupting bacterial communication, an alternative to antibiotics?Rémy, B., Plener, L., Elias, M., Daudé, D. & Chabrière, E., Nov 1 2016, In : Annales Pharmaceutiques Francaises. 74, 6, p. 413-420 8 p.

Research output: Contribution to journalReview article

9 Scopus citations

Evolutionary Paradigms from Ancient and Ongoing Conflicts between the Lentiviral Vif Protein and Mammalian APOBEC3 Enzymes

Harris, R. S. & Anderson, B. D., Dec 1 2016, In : PLoS pathogens. 12, 12, e1005958.

Research output: Contribution to journalReview article

Open Access
12 Scopus citations

Polytheonamide biosynthesis showcasing the metabolic potential of sponge-associated uncultivated 'Entotheonella' bacteria

Freeman, M. F., Vagstad, A. L. & Piel, J., Apr 1 2016, In : Current opinion in chemical biology. 31, p. 8-14 7 p.

Research output: Contribution to journalReview article

31 Scopus citations

Synthetic biology to access and expand nature's chemical diversity

Smanski, M. J., Zhou, H., Claesen, J., Shen, B., Fischbach, M. A. & Voigt, C. A., Feb 15 2016, In : Nature Reviews Microbiology. 14, 3, p. 135-149 15 p.

Research output: Contribution to journalReview article

203 Scopus citations

Thematic review series: Lipotoxicity: Many roads to cell dysfunction and cell death: Oxidative stress and lipotoxicity

Hauck, A. K. & Bernlohr, D. A., Jan 1 2016, In : Journal of Lipid Research. 57, 11, p. 1976-1986 11 p.

Research output: Contribution to journalReview article

Open Access
70 Scopus citations
2015

Altered calcium signaling in cancer cells

Stewart, T. A., Yapa, K. T. D. S. & Monteith, G. R., Oct 10 2015, In : Biochimica et Biophysica Acta - Biomembranes. 1848, 10, p. 2502-2511 10 p.

Research output: Contribution to journalReview article

119 Scopus citations

APOBEC Enzymes: Mutagenic Fuel for Cancer Evolution and Heterogeneity

Swanton, C., McGranahan, N., Starrett, G. J. & Harris, R. S., Jul 1 2015, In : Cancer discovery. 5, 7, p. 704-712 9 p.

Research output: Contribution to journalReview article

162 Scopus citations

APOBECs and virus restriction

Harris, R. S. & Dudley, J. P., May 1 2015, In : Virology. 479-480, p. 131-145 15 p.

Research output: Contribution to journalReview article

165 Scopus citations

How the Same Core Catalytic Machinery Catalyzes 17 Different Reactions: The Serine-Histidine-Aspartate Catalytic Triad of α/β-Hydrolase Fold Enzymes

Rauwerdink, A. & Kazlauskas, R. J., Oct 2 2015, In : ACS Catalysis. 5, 10, p. 6153-6176 24 p.

Research output: Contribution to journalReview article

69 Scopus citations

Metabolic functions of FABPs - Mechanisms and therapeutic implications

Hotamisligil, G. S. & Bernlohr, D. A., Oct 19 2015, In : Nature Reviews Endocrinology. 11, 10, p. 592-605 14 p.

Research output: Contribution to journalReview article

173 Scopus citations

Minimum Information about a Biosynthetic Gene cluster

Medema, M. H., Kottmann, R., Yilmaz, P., Cummings, M., Biggins, J. B., Blin, K., De Bruijn, I., Chooi, Y. H., Claesen, J., Coates, R. C., Cruz-Morales, P., Duddela, S., Düsterhus, S., Edwards, D. J., Fewer, D. P., Garg, N., Geiger, C., Gomez-Escribano, J. P., Greule, A., Hadjithomas, M. & 134 others, Haines, A. S., Helfrich, E. J. N., Hillwig, M. L., Ishida, K., Jones, A. C., Jones, C. S., Jungmann, K., Kegler, C., Kim, H. U., Kötter, P., Krug, D., Masschelein, J., Melnik, A. V., Mantovani, S. M., Monroe, E. A., Moore, M., Moss, N., Nützmann, H. W., Pan, G., Pati, A., Petras, D., Reen, F. J., Rosconi, F., Rui, Z., Tian, Z., Tobias, N. J., Tsunematsu, Y., Wiemann, P., Wyckoff, E., Yan, X., Yim, G., Yu, F., Xie, Y., Aigle, B., Apel, A. K., Balibar, C. J., Balskus, E. P., Barona-Gómez, F., Bechthold, A., Bode, H. B., Borriss, R., Brady, S. F., Brakhage, A. A., Caffrey, P., Cheng, Y. Q., Clardy, J., Cox, R. J., De Mot, R., Donadio, S., Donia, M. S., Van Der Donk, W. A., Dorrestein, P. C., Doyle, S., Driessen, A. J. M., Ehling-Schulz, M., Entian, K. D., Fischbach, M. A., Gerwick, L., Gerwick, W. H., Gross, H., Gust, B., Hertweck, C., Höfte, M., Jensen, S. E., Ju, J., Katz, L., Kaysser, L., Klassen, J. L., Keller, N. P., Kormanec, J., Kuipers, O. P., Kuzuyama, T., Kyrpides, N. C., Kwon, H. J., Lautru, S., Lavigne, R., Lee, C. Y., Linquan, B., Liu, X., Liu, W., Luzhetskyy, A., Mahmud, T., Mast, Y., Méndez, C., Metsä-Ketelä, M., Micklefield, J., Mitchell, D. A., Moore, B. S., Moreira, L. M., Müller, R., Neilan, B. A., Nett, M., Nielsen, J., O'Gara, F., Oikawa, H., Osbourn, A., Osburne, M. S., Ostash, B., Payne, S. M., Pernodet, J. L., Petricek, M., Piel, J., Ploux, O., Raaijmakers, J. M., Salas, J. A., Schmitt, E. K., Scott, B., Seipke, R. F., Shen, B., Sherman, D. H., Sivonen, K., Smanski, M. J., Sosio, M., Stegmann, E., Süssmuth, R. D., Tahlan, K., Thomas, C. M., Tang, Y., Truman, A. W., Viaud, M., Walton, J. D., Walsh, C. T., Weber, T., Van Wezel, G. P., Wilkinson, B., Willey, J. M., Wohlleben, W., Wright, G. D., Ziemert, N., Zhang, C., Zotchev, S. B., Breitling, R., Takano, E. & Glöckner, F. O., Aug 18 2015, In : Nature Chemical Biology. 11, 9, p. 625-631 7 p.

Research output: Contribution to journalReview article

293 Scopus citations

Molecular mechanism and clinical impact of APOBEC3B-catalyzed mutagenesis in breast cancer

Harris, R. S., Jan 21 2015, In : Breast Cancer Research. 17, 1, 8.

Research output: Contribution to journalReview article

38 Scopus citations

Thymineless Death Lives On: New Insights into a Classic Phenomenon

Khodursky, A., Guzmán, E. C. & Hanawalt, P. C., Oct 15 2015, In : Annual Review of Microbiology. 69, 1, p. 247-263 17 p.

Research output: Contribution to journalReview article

21 Scopus citations
2014

Advances in the directed evolution of proteins

Lane, M. D. & Seelig, B., Oct 1 2014, In : Current opinion in chemical biology. 22, p. 129-136 8 p.

Research output: Contribution to journalReview article

55 Scopus citations

Designer microbes for biosynthesis

Quin, M. B. & Schmidt-Dannert, C., Oct 2014, In : Current opinion in biotechnology. 29, 1, p. 55-61 7 p.

Research output: Contribution to journalReview article

16 Scopus citations

Targeting EMT in cancer: Opportunities for pharmacological intervention

Davis, F. M., Stewart, T. A., Thompson, E. W. & Monteith, G. R., Sep 2014, In : Trends in Pharmacological Sciences. 35, 9, p. 479-488 10 p.

Research output: Contribution to journalReview article

164 Scopus citations

The universality of enzymatic rate-temperature dependency

Elias, M., Wieczorek, G., Rosenne, S. & Tawfik, D. S., Jan 1 2014, In : Trends in Biochemical Sciences. 39, 1, p. 1-7 7 p.

Research output: Contribution to journalReview article

71 Scopus citations

Traversing the fungal terpenome

Quin, M. B., Flynn, C. M. & Schmidt-Dannert, C., Oct 1 2014, In : Natural Product Reports. 31, 10, p. 1449-1473 25 p.

Research output: Contribution to journalReview article

103 Scopus citations
2013

Cell death and survival through the endoplasmic reticulum-mitochondrial axis

Bravo-Sagua, R., Rodriguez, A. E., Kuzmicic, J., Gutierrez, T., Lopez-Crisosto, C., Quiroga, C., Díaz-Elizondo, J., Chiong, M., Gillette, T. G., Rothermel, B. A. & Lavandero, S., Jan 1 2013, In : Current Molecular Medicine. 13, 2, p. 317-329 13 p.

Research output: Contribution to journalReview article

57 Scopus citations

Evaluating pesticide degradation in the environment: Blind spots and emerging opportunities

Fenner, K., Canonica, S., Wackett, L. P. & Elsner, M., Jan 1 2013, In : Science. 341, 6147, p. 752-758 7 p.

Research output: Contribution to journalReview article

356 Scopus citations

Mass spectrometry-based proteomics: basic principles and emerging technologies and directions.

Van Riper, S. K., de Jong, E. P., Carlis, J. V. & Griffin, T. J., Jun 20 2013, In : Advances in Experimental Medicine and Biology. 990, p. 1-35 35 p.

Research output: Contribution to journalReview article

MauG: A di-heme enzyme required for methylamine dehydrogenase maturation

Wilmot, C. M. & Yukl, E. T., Mar 7 2013, In : Dalton Transactions. 42, 9, p. 3127-3135 9 p.

Research output: Contribution to journalReview article

9 Scopus citations

Oxidative stress and protein carbonylation in adipose tissue - Implications for insulin resistance and diabetes mellitus

Ruskovska, T. & Bernlohr, D. A., Oct 30 2013, In : Journal of Proteomics. 92, p. 323-334 12 p.

Research output: Contribution to journalReview article

51 Scopus citations

Posttranslational biosynthesis of the protein-derived cofactor tryptophan tryptophylquinone

Davidson, V. L. & Wilmot, C. M., Jun 1 2013, In : Annual Review of Biochemistry. 82, p. 531-550 20 p.

Research output: Contribution to journalReview article

28 Scopus citations

Structures of MauG in complex with quinol and quinone MADH

Yukl, E. T., Jensen, L. M. R., Davidson, V. L. & Wilmot, C. M., Jul 1 2013, In : Acta Crystallographica Section F: Structural Biology and Crystallization Communications. 69, 7, p. 738-743 6 p.

Research output: Contribution to journalReview article

7 Scopus citations
2012

Bacterial diterpene synthases: New opportunities for mechanistic enzymology and engineered biosynthesis

Smanski, M. J., Peterson, R. M., Huang, S. X. & Shen, B., Apr 1 2012, In : Current opinion in chemical biology. 16, 1-2, p. 132-141 10 p.

Research output: Contribution to journalReview article

60 Scopus citations

Protein carbonylation and metabolic control systems

Curtis, J. M., Hahn, W. S., Long, E. K., Burrill, J. S., Arriaga, E. A. & Bernlohr, D. A., Aug 1 2012, In : Trends in Endocrinology and Metabolism. 23, 8, p. 399-406 8 p.

Research output: Contribution to journalReview article

73 Scopus citations
2011

Engineering microbes to produce biofuels

Wackett, L. P., Jun 1 2011, In : Current opinion in biotechnology. 22, 3, p. 388-393 6 p.

Research output: Contribution to journalReview article

30 Scopus citations

Engineering of biocatalysts: From evolution to creation

Quin, M. B. & Schmidt-Dannert, C., Sep 2 2011, In : ACS Catalysis. 1, 9, p. 1017-1021 5 p.

Research output: Contribution to journalReview article

61 Scopus citations

Hdac-mediated control of endochondral and intramembranous ossification

Bradley, E. W., McGee-Lawrence, M. E. & Westendorf, J. J., Nov 14 2011, In : Critical Reviews in Eukaryotic Gene Expression. 21, 2, p. 101-113 13 p.

Research output: Contribution to journalReview article

37 Scopus citations

NMR reveals novel mechanisms of protein activity regulation

Kalodimos, C., May 1 2011, In : Protein Science. 20, 5, p. 773-782 10 p.

Research output: Contribution to journalReview article

39 Scopus citations