Biochemistry, Molecular Biology, and Biophysics (CBS)

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2020

A large-scale comparative study of isoform expressions measured on four platforms

Zhang, W., Petegrosso, R., Chang, J. W., Sun, J., Yong, J., Chien, J. & Kuang, R., Mar 30 2020, In : BMC Genomics. 21, 1, 272.

Research output: Contribution to journalArticle

Open Access

A multiproducer microbiome generates chemical diversity in the marine sponge Mycale hentscheli

Rust, M., Helfrich, E. J. N., Freeman, M. F., Nanudorn, P., Field, C. M., Rückert, C., Kündig, T., Page, M. J., Webb, V. L., Kalinowski, J., Sunagawa, S. & Piel, J., Apr 28 2020, In : Proceedings of the National Academy of Sciences of the United States of America. 117, 17, p. 9508-9518 11 p.

Research output: Contribution to journalArticle

Open Access

APOBEC3B-mediated corruption of the tumor cell immunopeptidome induces heteroclitic neoepitopes for cancer immunotherapy

Driscoll, C. B., Schuelke, M. R., Kottke, T., Thompson, J. M., Wongthida, P., Tonne, J. M., Huff, A. L., Miller, A., Shim, K. G., Molan, A., Wetmore, C., Selby, P., Samson, A., Harrington, K., Pandha, H., Melcher, A., Pulido, J. S., Harris, R., Evgin, L. & Vile, R. G., Dec 1 2020, In : Nature communications. 11, 1, 790.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations

A soluble truncated tau species related to cognitive dysfunction is elevated in the brain of cognitively impaired human individuals

Liu, P., Smith, B. R., Montonye, M. L., Kemper, L. J., Leinonen-Wright, K., Nelson, K. M., Higgins, L. A., Guerrero, C. R., Markowski, T. W., Zhao, X., Petersen, A. J., Knopman, D. S., Petersen, R. C. & Ashe, K. H., Dec 1 2020, In : Scientific reports. 10, 1, 3869.

Research output: Contribution to journalArticle

Open Access

Cyanuric acid biodegradation via biuret: Physiology, taxonomy, and geospatial distribution

Aukema, K. G., Tassoulas, L. J., Robinson, S. L., Konopatski, J. F., Bygd, M. D. & Wackett, L. P., Jan 1 2020, In : Applied and environmental microbiology. 86, 2, e01964-19.

Research output: Contribution to journalArticle

Effects of Signal Disruption Depends on the Substrate Preference of the Lactonase

Mahan, K., Martinmaki, R., Larus, I., Sikdar, R., Dunitz, J. & Elias, M., Jan 14 2020, In : Frontiers in Microbiology. 10, 3003.

Research output: Contribution to journalArticle

Open Access

Herpes simplex virus blocks host transcription termination via the bimodal activities of ICP27

Wang, X., Hennig, T., Whisnant, A. W., Erhard, F., Prusty, B. K., Friedel, C. C., Forouzmand, E., Hu, W., Erber, L., Chen, Y., Sandri-Goldin, R. M., Dölken, L. & Shi, Y., Dec 1 2020, In : Nature communications. 11, 1, 293.

Research output: Contribution to journalArticle

Open Access

In vivo assay reveals microbial olea thiolases initiating hydrocarbon and β-lactone biosynthesis

Smith, M. D., Robinson, S. L., Molomjamts, M. & Wackett, L. P., Mar 1 2020, In : mBio. 11, 2, e00111-20.

Research output: Contribution to journalArticle

Open Access

Lactonase Specificity Is Key to Quorum Quenching in Pseudomonas aeruginosa

Rémy, B., Plener, L., Decloquement, P., Armstrong, N., Elias, M., Daudé, D. & Chabrière, É., Apr 24 2020, In : Frontiers in Microbiology. 11, 762.

Research output: Contribution to journalArticle

Open Access
Open Access

Pale (Clear) Cell Acanthoma of the Palate

Argyris, P. P., Ho, D., Nelson, A. C. & Koutlas, I. G., Jun 1 2020, In : Head and Neck Pathology. 14, 2, p. 535-541 7 p.

Research output: Contribution to journalArticle

Platform-integrated mRNA isoform quantification

Sun, J., Chang, J. W., Zhang, T., Yong, J., Kuang, R. & Zhang, W., Apr 15 2020, In : Bioinformatics (Oxford, England). 36, 8, p. 2466-2473 8 p.

Research output: Contribution to journalArticle

Primary Intraosseous Xanthomas of the Jaws: A Series of Six Cases Including an Example with Formation of Apoptosis-Related Hyaline Globules, So-Called “Thanatosomes”

Wilkinson, P. E., Merkourea, S., Gopalakrishnan, R. & Argyris, P. P., Jan 1 2020, (Accepted/In press) In : Head and Neck Pathology.

Research output: Contribution to journalArticle

Structural insights into the promiscuous DNA binding and broad substrate selectivity of fowlpox virus resolvase

Li, N., Shi, K., Rao, T., Banerjee, S. & Aihara, H., Dec 1 2020, In : Scientific reports. 10, 1, 393.

Research output: Contribution to journalArticle

Open Access
2019

A conserved mechanism of APOBEC3 relocalization by herpesviral ribonucleotide reductase large subunits

Cheng, A. Z., Moraes, S. N., Attarian, C., Yockteng-Melgar, J., Jarvis, M. C., Biolatti, M., Galitska, G., Dell'Oste, V., Frappier, L., Bierle, C. J., Rice, S. A. & Harris, R. S., Dec 1 2019, In : Journal of virology. 9, 23, e01539-19.

Research output: Contribution to journalArticle

1 Scopus citations
Open Access
3 Scopus citations

Adipose oxidative stress and protein carbonylation

Hauck, A. K., Huang, Y., Hertzel, A. V. & Bernlohr, D. A., Jan 25 2019, In : Journal of Biological Chemistry. 294, 4, p. 1083-1088 6 p.

Research output: Contribution to journalArticle

Open Access
10 Scopus citations

A Gradient in Metaphase Tension Leads to a Scaled Cellular Response in Mitosis

Mukherjee, S., Sandri, B. J., Tank, D., McClellan, M., Harasymiw, L. A., Yang, Q., Parker, L. L. & Gardner, M. K., Apr 8 2019, In : Developmental Cell. 49, 1, p. 63-76.e10

Research output: Contribution to journalArticle

2 Scopus citations

A lentivirus-based system for Cas9/gRNA expression and subsequent removal by Cre-mediated recombination

Carpenter, M. A., Law, E. K., Serebrenik, A., Brown, W. L. & Harris, R. S., Mar 1 2019, In : Methods. 156, p. 79-84 6 p.

Research output: Contribution to journalArticle

4 Scopus citations
4 Scopus citations

Antibiotic-induced Disruption of Intestinal Microbiota Contributes to Failure of Vertical Sleeve Gastrectomy

Jahansouz, C., Staley, C., Kizy, S., Xu, H., Hertzel, A. V., Coryell, J., Singroy, S., Hamilton, M., DuRand, M., Bernlohr, D. A., Sadowsky, M. J., Khoruts, A. & Ikramuddin, S., Jun 1 2019, In : Annals of surgery. 269, 6, p. 1092-1100 9 p.

Research output: Contribution to journalArticle

A panel of eGFP reporters for single base editing by APOBEC-Cas9 editosome complexes

Martin, A. S., Salamango, D. J., Serebrenik, A. A., Shaban, N. M., Brown, W. L. & Harris, R. S., Dec 1 2019, In : Scientific reports. 9, 1, 497.

Research output: Contribution to journalArticle

Open Access
2 Scopus citations

A Quantitative Chemical Proteomics Approach for Site-specific Stoichiometry Analysis of Ubiquitination

Li, Y., Evers, J., Luo, A., Erber, L., Postler, Z. & Chen, Y., Jan 8 2019, In : Angewandte Chemie - International Edition. 58, 2, p. 537-541 5 p.

Research output: Contribution to journalArticle

4 Scopus citations

Ascomycete Aspergillus oryzae is an efficient expression host for production of basidiomycete terpenes by using genomic DNA sequences

Nagamine, S., Liu, C., Nishishita, J., Kozaki, T., Sogahata, K., Sato, Y., Minami, A., Ozaki, T., Schmidt-Dannert, C., Maruyama, J. I. & Oikawa, H., Jan 1 2019, In : Applied and environmental microbiology. 85, 15, e00409-19.

Research output: Contribution to journalArticle

Open Access
3 Scopus citations
Open Access
1 Scopus citations
1 Scopus citations

Complete genome sequences of Streptomyces spp. isolated from disease-suppressive soils

Heinsch, S. C., Hsu, S. Y., Otto-Hanson, L., Kinkel, L. & Smanski, M. J., Dec 19 2019, In : BMC Genomics. 20, 1, 994.

Research output: Contribution to journalArticle

Open Access

Crystal structure of the Wheat dwarf virus Rep domain Everett Blake A.

Everett, B. A., Litzau, L. A., Tompkins, K., Shi, K., Nelson, A., Aihara, H., Evans, R. L. E. & Gordon, W. R., Dec 1 2019, In : Acta Crystallographica Section F: Structural Biology Communications. 75, p. 744-749 6 p.

Research output: Contribution to journalArticle

Open Access

Cushing’s syndrome driver mutation disrupts protein kinase A allosteric network, altering both regulation and substrate specificity

Walker, C., Wang, Y., Olivieri, C., Karamafrooz, A., Casby, J., Bathon, K., Calebiro, D., Gao, J., Bernlohr, D. A., Taylor, S. S. & Veglia, G., Aug 28 2019, In : Science advances. 5, 8, eaaw9298.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations

Cyanuric acid hydrolase reveal conformational flexibility and asymmetry important for catalysis

Shi, K., Cho, S., Aukema, K. G., Lee, T., Bera, A. K., Seffernick, J. L., Wackett, L. P. & Aihara, H., Jun 2019, In : PloS one. 14, 6, e0216979.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations

Deficiency in the phosphatase PHLPP1 suppresses osteoclast-mediated bone resorption and enhances bone formation in mice

Mattson, A. M., Begun, D. L., Molstad, D. H. H., Meyer, M. A., Oursler, M. J., Westendorf, J. J. & Bradley, E. W., Jan 1 2019, In : Journal of Biological Chemistry. 294, 31, p. 11772-11784 13 p.

Research output: Contribution to journalArticle

Dentin Priming with Amphipathic Antimicrobial Peptides

Moussa, D. G., Kirihara, J. A., Ye, Z., Fischer, N. G., Khot, J., Witthuhn, B. A. & Aparicio, C., Sep 1 2019, In : Journal of dental research. 98, 10, p. 1112-1121 10 p.

Research output: Contribution to journalArticle

2 Scopus citations

Determinants of Oligonucleotide Selectivity of APOBEC3B

Wagner, J. R., Demir, Ö., Carpenter, M. A., Aihara, H., Harki, D. A., Harris, R. S. & Amaro, R. E., May 28 2019, In : Journal of Chemical Information and Modeling. 59, 5, p. 2264-2273 10 p.

Research output: Contribution to journalArticle

4 Scopus citations

Developing a Protein Scaffolding System for Rapid Enzyme Immobilization and Optimization of Enzyme Functions for Biocatalysis

Zhang, G., Johnston, T., Quin, M. B. & Schmidt-Dannert, C., Aug 16 2019, In : ACS Synthetic Biology. 8, 8, p. 1867-1876 10 p.

Research output: Contribution to journalArticle

2 Scopus citations

Development of a synthetic cumate-inducible gene expression system for Bacillus

Seo, S. O. & Schmidt-Dannert, C., Jan 1 2019, In : Applied Microbiology and Biotechnology. 103, 1, p. 303-313 11 p.

Research output: Contribution to journalArticle

2 Scopus citations

Discovery of Hydroxylase Activity for PqqB Provides a Missing Link in the Pyrroloquinoline Quinone Biosynthetic Pathway

Koehn, E. M., Latham, J. A., Armand, T., Evans, R. L., Tu, X., Wilmot, C. M., Iavarone, A. T. & Klinman, J. P., Mar 13 2019, In : Journal of the American Chemical Society. 141, 10, p. 4398-4405 8 p.

Research output: Contribution to journalArticle

6 Scopus citations

Distinct Autocatalytic α- N-Methylating Precursors Expand the Borosin RiPP Family of Peptide Natural Products

Quijano, M. R., Zach, C., Miller, F. S., Lee, A. R., Imani, A. S., Künzler, M. & Freeman, M. F., Jun 19 2019, In : Journal of the American Chemical Society. 141, 24, p. 9637-9644 8 p.

Research output: Contribution to journalArticle

1 Scopus citations

Distinct cancer-promoting stromal gene expression depending on lung function

Sandri, B. J., Masvidal, L., Murie, C., Bartish, M., Avdulov, S., Higgins, L. A., Markowski, T., Peterson, M., Bergh, J., Yang, P., Rolny, C., Limper, A. H., Griffin, T. J., Bitterman, P. B., Wendt, C. H. & Larsson, O., Aug 1 2019, In : American journal of respiratory and critical care medicine. 200, 3, p. 348-358 11 p.

Research output: Contribution to journalArticle

4 Scopus citations

Dystrophinopathy-associated dysfunction of Krebs cycle metabolism

Lindsay, A., Chamberlain, C. M., Witthuhn, B. A., Lowe, D. A. & Ervasti, J. M., Jan 1 2019, In : Human molecular genetics. 28, 6, p. 942-951 10 p.

Research output: Contribution to journalArticle

4 Scopus citations

Enhancement of biocatalyst activity and protection against stressors using a microbial exoskeleton

Sakkos, J. K., Wackett, L. P. & Aksan, A., Dec 1 2019, In : Scientific reports. 9, 1, 3158.

Research output: Contribution to journalArticle

Open Access
3 Scopus citations

Enhancing subtilisin thermostability through a modified normalized B-factor analysis and loop-grafting strategy

Tang, H., Shi, K., Shi, C., Aihara, H., Zhang, J. & Du, G., Nov 29 2019, In : Journal of Biological Chemistry. 294, 48, p. 18398-18407 10 p.

Research output: Contribution to journalArticle

Evaluation of biological and enzymatic quorum quencher coating additives to reduce biocorrosion of steel

Huang, S., Bergonzi, C., Schwab, M., Elias, M. H. & Hicks, R. E., May 2019, In : PloS one. 14, 5, e0217059.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations

Evolved proteins inhibit entry of enfuvirtide-resistant HIV-1

Ikeda, T., Tennyson, R. L., Walker, S. N., Harris, R. & Mcnaughton, B. R., Apr 12 2019, In : ACS Infectious Diseases. 5, 4, p. 634-640 7 p.

Research output: Contribution to journalArticle

1 Scopus citations

Expression of the Fusarium graminearum terpenome and involvement of the endoplasmic reticulum-derived toxisome

Flynn, C. M., Broz, K., Jonkers, W., Schmidt-Dannert, C. & Kistler, H. C., Mar 2019, In : Fungal Genetics and Biology. 124, p. 78-87 10 p.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations

Freeze/thaw of IGG solutions

Horn, J., Jena, S., Aksan, A. & Friess, W., Jan 2019, In : European Journal of Pharmaceutics and Biopharmaceutics. 134, p. 185-189 5 p.

Research output: Contribution to journalArticle

2 Scopus citations