Biochemistry, Molecular Biology, and Biophysics (CBS)

Research Output

2020

A large-scale comparative study of isoform expressions measured on four platforms

Zhang, W., Petegrosso, R., Chang, J. W., Sun, J., Yong, J., Chien, J. & Kuang, R., Mar 30 2020, In : BMC Genomics. 21, 1, 272.

Research output: Contribution to journalArticle

Open Access

A multiproducer microbiome generates chemical diversity in the marine sponge Mycale hentscheli

Rust, M., Helfrich, E. J. N., Freeman, M. F., Nanudorn, P., Field, C. M., Rückert, C., Kündig, T., Page, M. J., Webb, V. L., Kalinowski, J., Sunagawa, S. & Piel, J., Apr 28 2020, In : Proceedings of the National Academy of Sciences of the United States of America. 117, 17, p. 9508-9518 11 p.

Research output: Contribution to journalArticle

Open Access

APOBEC3B-mediated corruption of the tumor cell immunopeptidome induces heteroclitic neoepitopes for cancer immunotherapy

Driscoll, C. B., Schuelke, M. R., Kottke, T., Thompson, J. M., Wongthida, P., Tonne, J. M., Huff, A. L., Miller, A., Shim, K. G., Molan, A., Wetmore, C., Selby, P., Samson, A., Harrington, K., Pandha, H., Melcher, A., Pulido, J. S., Harris, R., Evgin, L. & Vile, R. G., Dec 1 2020, In : Nature communications. 11, 1, 790.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations

A soluble truncated tau species related to cognitive dysfunction is elevated in the brain of cognitively impaired human individuals

Liu, P., Smith, B. R., Montonye, M. L., Kemper, L. J., Leinonen-Wright, K., Nelson, K. M., Higgins, L. A., Guerrero, C. R., Markowski, T. W., Zhao, X., Petersen, A. J., Knopman, D. S., Petersen, R. C. & Ashe, K. H., Dec 1 2020, In : Scientific reports. 10, 1, 3869.

Research output: Contribution to journalArticle

Open Access

Cyanuric acid biodegradation via biuret: Physiology, taxonomy, and geospatial distribution

Aukema, K. G., Tassoulas, L. J., Robinson, S. L., Konopatski, J. F., Bygd, M. D. & Wackett, L. P., Jan 1 2020, In : Applied and environmental microbiology. 86, 2, e01964-19.

Research output: Contribution to journalArticle

Effects of Signal Disruption Depends on the Substrate Preference of the Lactonase

Mahan, K., Martinmaki, R., Larus, I., Sikdar, R., Dunitz, J. & Elias, M., Jan 14 2020, In : Frontiers in Microbiology. 10, 3003.

Research output: Contribution to journalArticle

Open Access

Herpes simplex virus blocks host transcription termination via the bimodal activities of ICP27

Wang, X., Hennig, T., Whisnant, A. W., Erhard, F., Prusty, B. K., Friedel, C. C., Forouzmand, E., Hu, W., Erber, L., Chen, Y., Sandri-Goldin, R. M., Dölken, L. & Shi, Y., Dec 1 2020, In : Nature communications. 11, 1, 293.

Research output: Contribution to journalArticle

Open Access

High throughput sequencing of: In vitro selections of mRNA-displayed peptides: Data analysis and applications

Blanco, C., Verbanic, S., Seelig, B. & Chen, I. A., Mar 28 2020, In : Physical Chemistry Chemical Physics. 22, 12, p. 6492-6506 15 p.

Research output: Contribution to journalReview article

Open Access

In Vitro Selection of Peptides and Proteins-Advantages of mRNA Display

Newton, M. S., Cabezas-Perusse, Y., Tong, C. L. & Seelig, B., Feb 21 2020, In : ACS Synthetic Biology. 9, 2, p. 181-190 10 p.

Research output: Contribution to journalReview article

In vivo assay reveals microbial olea thiolases initiating hydrocarbon and β-lactone biosynthesis

Smith, M. D., Robinson, S. L., Molomjamts, M. & Wackett, L. P., Mar 1 2020, In : mBio. 11, 2, e00111-20.

Research output: Contribution to journalArticle

Open Access

Lactonase Specificity Is Key to Quorum Quenching in Pseudomonas aeruginosa

Rémy, B., Plener, L., Decloquement, P., Armstrong, N., Elias, M., Daudé, D. & Chabrière, É., Apr 24 2020, In : Frontiers in Microbiology. 11, 762.

Research output: Contribution to journalArticle

Open Access
Open Access
Open Access

Pale (Clear) Cell Acanthoma of the Palate

Argyris, P. P., Ho, D., Nelson, A. C. & Koutlas, I. G., Jun 1 2020, In : Head and Neck Pathology. 14, 2, p. 535-541 7 p.

Research output: Contribution to journalArticle

Platform-integrated mRNA isoform quantification

Sun, J., Chang, J. W., Zhang, T., Yong, J., Kuang, R. & Zhang, W., Apr 15 2020, In : Bioinformatics (Oxford, England). 36, 8, p. 2466-2473 8 p.

Research output: Contribution to journalArticle

Primary Intraosseous Xanthomas of the Jaws: A Series of Six Cases Including an Example with Formation of Apoptosis-Related Hyaline Globules, So-Called “Thanatosomes”

Wilkinson, P. E., Merkourea, S., Gopalakrishnan, R. & Argyris, P. P., Jan 1 2020, (Accepted/In press) In : Head and Neck Pathology.

Research output: Contribution to journalArticle

Structural basis of receptor recognition by SARS-CoV-2

Shang, J., Ye, G., Shi, K., Wan, Y., Luo, C., Aihara, H., Geng, Q., Auerbach, A. & Li, F., May 14 2020, In : Nature. 581, 7807, p. 221-224 4 p.

Research output: Contribution to journalArticle

Open Access

Structural insights into the promiscuous DNA binding and broad substrate selectivity of fowlpox virus resolvase

Li, N., Shi, K., Rao, T., Banerjee, S. & Aihara, H., Dec 1 2020, In : Scientific reports. 10, 1, 393.

Research output: Contribution to journalArticle

Open Access
2019

A conserved mechanism of APOBEC3 relocalization by herpesviral ribonucleotide reductase large subunits

Cheng, A. Z., Moraes, S. N., Attarian, C., Yockteng-Melgar, J., Jarvis, M. C., Biolatti, M., Galitska, G., Dell'Oste, V., Frappier, L., Bierle, C. J., Rice, S. A. & Harris, R. S., Dec 1 2019, In : Journal of virology. 9, 23, e01539-19.

Research output: Contribution to journalArticle

1 Scopus citations
Open Access
3 Scopus citations

Adipose oxidative stress and protein carbonylation

Hauck, A. K., Huang, Y., Hertzel, A. V. & Bernlohr, D. A., Jan 25 2019, In : Journal of Biological Chemistry. 294, 4, p. 1083-1088 6 p.

Research output: Contribution to journalArticle

Open Access
10 Scopus citations

A Gradient in Metaphase Tension Leads to a Scaled Cellular Response in Mitosis

Mukherjee, S., Sandri, B. J., Tank, D., McClellan, M., Harasymiw, L. A., Yang, Q., Parker, L. L. & Gardner, M. K., Apr 8 2019, In : Developmental Cell. 49, 1, p. 63-76.e10

Research output: Contribution to journalArticle

2 Scopus citations

A lentivirus-based system for Cas9/gRNA expression and subsequent removal by Cre-mediated recombination

Carpenter, M. A., Law, E. K., Serebrenik, A., Brown, W. L. & Harris, R. S., Mar 1 2019, In : Methods. 156, p. 79-84 6 p.

Research output: Contribution to journalArticle

4 Scopus citations
4 Scopus citations

An enhanced molecular tension sensor based on bioluminescence resonance energy transfer (BRET)

Aird, E. J., Tompkins, K. J. & Gordon, W. R., Apr 24 2019

Research output: Other contribution

Open Access

Antibiotic-induced Disruption of Intestinal Microbiota Contributes to Failure of Vertical Sleeve Gastrectomy

Jahansouz, C., Staley, C., Kizy, S., Xu, H., Hertzel, A. V., Coryell, J., Singroy, S., Hamilton, M., DuRand, M., Bernlohr, D. A., Sadowsky, M. J., Khoruts, A. & Ikramuddin, S., Jun 1 2019, In : Annals of surgery. 269, 6, p. 1092-1100 9 p.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations

A panel of eGFP reporters for single base editing by APOBEC-Cas9 editosome complexes

Martin, A. S., Salamango, D. J., Serebrenik, A. A., Shaban, N. M., Brown, W. L. & Harris, R. S., Dec 1 2019, In : Scientific reports. 9, 1, 497.

Research output: Contribution to journalArticle

Open Access
2 Scopus citations

A Quantitative Chemical Proteomics Approach for Site-specific Stoichiometry Analysis of Ubiquitination

Li, Y., Evers, J., Luo, A., Erber, L., Postler, Z. & Chen, Y., Jan 8 2019, In : Angewandte Chemie - International Edition. 58, 2, p. 537-541 5 p.

Research output: Contribution to journalArticle

4 Scopus citations

Ascomycete Aspergillus oryzae is an efficient expression host for production of basidiomycete terpenes by using genomic DNA sequences

Nagamine, S., Liu, C., Nishishita, J., Kozaki, T., Sogahata, K., Sato, Y., Minami, A., Ozaki, T., Schmidt-Dannert, C., Maruyama, J. I. & Oikawa, H., Jan 1 2019, In : Applied and environmental microbiology. 85, 15, e00409-19.

Research output: Contribution to journalArticle

Open Access
3 Scopus citations

Assays for tyrosine phosphorylation in human cells

Kruk, M., Widstrom, N., Jena, S., Wolter, N. L., Blankenhorn, J. F., Abdalla, I., Yang, T. Y. & Parker, L. L., 2019, Methods in Enzymology. Garcia, B. A. (ed.). Academic Press Inc., p. 375-406 32 p. (Methods in Enzymology; vol. 626).

Research output: Chapter in Book/Report/Conference proceedingChapter

Open Access
Open Access

Biological control of invasive fish and aquatic invertebrates: A brief review with case studies

Bajer, P. G., Ghosal, R., Maselko, M., Smanski, M. J., Lechelt, J. D., Hansen, G. & Kornis, M. S., Jun 2019, In : Management of Biological Invasions. 10, 2, p. 227-254 28 p.

Research output: Contribution to journalReview article

Open Access

Biosynthesis and chemical diversity of β-lactone natural products

Robinson, S. L., Christenson, J. K. & Wackett, L. P., Mar 2019, In : Natural Product Reports. 36, 3, p. 458-475 18 p.

Research output: Contribution to journalReview article

17 Scopus citations
1 Scopus citations
1 Scopus citations

Complete genome sequences of Streptomyces spp. isolated from disease-suppressive soils

Heinsch, S. C., Hsu, S. Y., Otto-Hanson, L., Kinkel, L. & Smanski, M. J., Dec 19 2019, In : BMC Genomics. 20, 1, 994.

Research output: Contribution to journalArticle

Open Access