Research Output

2020

Biodiversity of protists and nematodes in the wild nonhuman primate gut

Mann, A. E., Mazel, F., Lemay, M. A., Morien, E., Billy, V., Kowalewski, M., Di Fiore, A., Link, A., Goldberg, T. L., Tecot, S., Baden, A. L., Gomez, A., Sauther, M. L., Cuozzo, F. P., Rice, G. A. O., Dominy, N. J., Stumpf, R., Lewis, R. J., Swedell, L., Amato, K. & 1 others, Wegener Parfrey, L., Feb 1 2020, In : ISME Journal. 14, 2, p. 609-622 14 p.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations

Comparative analysis of the ileal bacterial composition of post-weaned pigs fed different high-quality protein sources

Ortman, J., Sinn, S. M., Gibbons, W. R., Brown, M. L., Derouchey, J. M., St-Pierre, B., Saqui-Salces, M. & Levesque, C. L., Jun 1 2020, In : Animal. 14, 6, p. 1156-1166 11 p.

Research output: Contribution to journalArticle

Open Access

Editing Myosin VB Gene to Create Porcine Model of Microvillus Inclusion Disease, With Microvillus-Lined Inclusions and Alterations in Sodium Transporters

Engevik, A. C., Coutts, A. W., Kaji, I., Rodriguez, P., Ongaratto, F., Saqui-Salces, M., Medida, R. L., Meyer, A. R., Kolobova, E., Engevik, M. A., Williams, J. A., Shub, M. D., Carlson, D. F., Melkamu, T. & Goldenring, J. R., Jun 2020, In : Gastroenterology. 158, 8, p. 2236-2249.e9

Research output: Contribution to journalArticle

Effect of Holstein genotype on innate immune and metabolic responses of heifers to lipopolysaccharide (LPS) administration

Cousillas-Boam, G., Weber, W. J., Benjamin, A., Kahl, S., Heins, B. J., Elsasser, T. H., Kerr, D. E. & Crooker, B. A., Jan 2020, In : Domestic Animal Endocrinology. 70, 106374.

Research output: Contribution to journalArticle

Open Access

Efficiency of crude protein utilisation in grazing dairy cows: A case study comparing two production systems differing in intensification level in new zealand

Correa-Luna, M., Donaghy, D., Kemp, P., Schutz, M. & López-Villalobos, N., Jun 2020, In : Animals. 10, 6, p. 1-18 18 p., 1036.

Research output: Contribution to journalArticle

Open Access
Open Access
1 Scopus citations

Fungal allergen-induced IL-33 secretion involves cholesterol-dependent, VDAC-1-mediated ATP release from the airway epithelium

Srisomboon, Y., Squillace, D. L., Maniak, P. J., Kita, H. & O'Grady, S. M., May 1 2020, In : Journal of Physiology. 598, 10, p. 1829-1845 17 p.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations

Growth performance of newborn dairy calves fed a milk replacer with 2 protein concentrations at 2 feeding rates

Jaeger, B. M., Ziegler, D., Schimek, D., Ziegler, B., Raeth, M., Chester-Jones, H. & Casper, D. P., Feb 2020, In : Applied Animal Science. 36, 1, p. 48-56 9 p.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations

GVCHAP: A Computing Pipeline for Genomic Prediction and Variance Component Estimation Using Haplotypes and SNP Markers

Prakapenka, D., Wang, C., Liang, Z., Bian, C., Tan, C. & Da, Y., Apr 7 2020, In : Frontiers in Genetics. 11, 282.

Research output: Contribution to journalArticle

Open Access

Inactivation of Aerosolized Newcastle Disease Virus with Non-thermal Plasma

Schiappacasse, C., Peng, P., Zhou, N., Liu, X., Zhai, J., Cheng, Y., Shao, J., Verma, V., Singh, N., Chen, P., Janni, K. A., Liang, Y., Noll, S. & Ruan, R. R., 2020, In : Applied Engineering in Agriculture. 36, 1, p. 55-60 6 p.

Research output: Contribution to journalArticle

1 Scopus citations

Inhalation exposure to cigarette smoke and inflammatory agents induces epigenetic changes in the lung

Seiler, C. L., Song, J. U. M., Kotandeniya, D., Chen, J., Kono, T. J. Y., Han, Q., Colwell, M., Auch, B., Sarver, A. L., Upadhyaya, P., Ren, Y., Faulk, C., De Flora, S., La Maestra, S., Chen, Y., Kassie, F. & Tretyakova, N. Y., Dec 1 2020, In : Scientific reports. 10, 1, 11290.

Research output: Contribution to journalArticle

Open Access

Maternal carriage of Prevotella during pregnancy associates with protection against food allergy in the offspring

the BIS Investigator Group & the J. Craig Venter Institute, Dec 1 2020, In : Nature communications. 11, 1, 1452.

Research output: Contribution to journalArticle

Open Access
3 Scopus citations

Microevolutionary Dynamics of Chicken Genomes under Divergent Selection for Adiposity

Zhang, H., Liang, Q., Wang, N., Wang, Q., Leng, L., Mao, J., Wang, Y., Wang, S., Zhang, J., Liang, H., Zhou, X., Li, Y., Cao, Z., Luan, P., Wang, Z., Yuan, H., Wang, Z., Zhou, X., Lamont, S. J., Da, Y. & 4 others, Li, R., Tian, S., Du, Z. & Li, H., Jun 26 2020, In : iScience. 23, 6, 101193.

Research output: Contribution to journalArticle

Open Access
Open Access
1 Scopus citations

Paradoxical whole genome DNA methylation dynamics of 5’aza-deoxycytidine in chronic low-dose exposure in mice

Colwell, M., Wanner, N. M., Drown, C., Drown, M., Dolinoy, D. C. & Faulk, C., 2020, In : Epigenetics.

Research output: Contribution to journalArticle

Secuenciación de moléculas individuales de ácidos nucleicos en tiempo real (SMRT) para caracterizar transcriptomas e isoformas de ARNm

Translated title of the contribution: Single molecule sequencing of nucleic acids in real time (SMRT) to characterize transcriptomes and mRNA isoformsde León, F. A. P., Guo, Y. & Crooker, B., Mar 8 2020, In : Revista Peruana de Biologia. 27, 1, p. 91-94 4 p.

Research output: Contribution to journalArticle

Open Access

Short communication: Effects of mesh leggings on fly pressure and fly avoidance behaviors of pastured dairy cows

Perttu, R. K., Heins, B. J., Phillips, H. N., Endres, M. I., Moon, R. D. & Sorge, U. S., Jan 2020, In : Journal of Dairy Science. 103, 1, p. 846-851 6 p.

Research output: Contribution to journalArticle

Open Access

Symposium review: Future of housing for dairy cattle

Galama, P. J., Ouweltjes, W., Endres, M. I., Sprecher, J. R., Leso, L., Kuipers, A. & Klopčič, M., Jun 2020, In : Journal of Dairy Science. 103, 6, p. 5759-5772 14 p.

Research output: Contribution to journalReview article

Open Access

The role of environmental exposures and the epigenome in health and disease

Perera, B. P. U., Faulk, C., Svoboda, L. K., Goodrich, J. M. & Dolinoy, D. C., Jan 1 2020, In : Environmental and Molecular Mutagenesis. 61, 1, p. 176-192 17 p.

Research output: Contribution to journalReview article

Open Access
6 Scopus citations

Who are farm animal welfare conscious consumers?

Boaitey, A. & Minegishi, K., Jan 1 2020, (Accepted/In press) In : British Food Journal.

Research output: Contribution to journalReview article

Youth and adult public views of dairy calf housing options

Perttu, R. K., Ventura, B. A. & Endres, M. I., Sep 2020, In : Journal of Dairy Science. 103, 9, p. 8507-8517 11 p.

Research output: Contribution to journalArticle

2019
Open Access
1 Scopus citations

A large-scale genome-wide association study in U.S. Holstein cattle

Jiang, J., Ma, L., Prakapenka, D., VanRaden, P. M., Cole, J. B. & Da, Y., Jan 1 2019, In : Frontiers in Genetics. 10, MAY, 412.

Research output: Contribution to journalArticle

Open Access
6 Scopus citations

Amino acid composition and digestible amino acid content in animal protein by-product meals fed to growing pigs

Kerr, B. J., Urriola, P. E., Jha, R., Thomson, J. E., Curry, S. M. & Shurson, G. C., Nov 4 2019, In : Journal of animal science. 97, 11, p. 4540-4547 8 p.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations

Antibiotics and host-tailored probiotics similarly modulate effects on the developing avian microbiome, mycobiome, and host gene expression

Ward, T. L., Weber, B. P., Mendoza, K. M., Danzeisen, J. L., Llop, K., Lang, K., Clayton, J. B., Grace, E., Brannon, J., Radovic, I., Beauclaire, M., Heisel, T. J., Knights, D., Cardona, C., Kogut, M., Johnson, C., Noll, S. L., Arsenault, R., Reed, K. M. & Johnson, T. J., 2019, In : mBio. 10, 5, e02171-19.

Research output: Contribution to journalArticle

Open Access
3 Scopus citations
1 Scopus citations

Association of flavonifractor plautii, a flavonoid-degrading bacterium, with the gut microbiome of colorectal cancer patients in India

Gupta, A., Dhakan, D. B., Maji, A., Saxena, R., Vishnu Prasoodanan, P. K., Mahajan, S., Pulikkan, J., Kurian, J., Gomez, A. M., Scaria, J., Amato, K. R., Sharma, A. K. & Sharma, V. K., Jan 1 2019, In : mSystems. 4, 6, e00438.

Research output: Contribution to journalArticle

Open Access
7 Scopus citations

Convergence of human and Old World monkey gut microbiomes demonstrates the importance of human ecology over phylogeny

Amato, K. R., Mallott, E. K., McDonald, D., Dominy, N. J., Goldberg, T., Lambert, J. E., Swedell, L., Metcalf, J. L., Gomez, A., Britton, G. A. O., Stumpf, R. M., Leigh, S. R. & Knight, R., Oct 8 2019, In : Genome biology. 20, 1, 201.

Research output: Contribution to journalArticle

Open Access
6 Scopus citations

Cross-sectional study of the relationships among bedding materials, bedding bacteria counts, and intramammary infection in late-lactation dairy cows

Rowe, S. M., Godden, S. M., Royster, E., Timmerman, J., Crooker, B. A. & Boyle, M., Dec 2019, In : Journal of Dairy Science. 102, 12, p. 11384-11400 17 p.

Research output: Contribution to journalArticle

5 Scopus citations

Early life social and ecological determinants of global DNA methylation in wild spotted hyenas

Laubach, Z. M., Faulk, C. D., Dolinoy, D. C., Montrose, L., Jones, T. R., Ray, D., Pioon, M. O. & Holekamp, K. E., Aug 1 2019, In : Molecular ecology. 28, 16, p. 3799-3812 14 p.

Research output: Contribution to journalArticle

2 Scopus citations

Effect of bovine genotype on innate immune response of heifers to repeated lipopolysaccharide (LPS) administration

Boam, G. C., Weber, W. J., Benjamin, A., Kahl, S., Allen Bridges, G., Elsasser, T. H., Kerr, D. & Crooker, B. A., Sep 2019, In : Veterinary immunology and immunopathology. 215, 109914.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations
Open Access

Effects of Lawsonia intracellularis infection in the proliferation of different mammalian cell lines

Resende, T. P., Pereira, C. E. R., Daniel, A. G. D. S., Vasquez, E., Saqui-Salces, M., Vannucci, F. A. & Gebhart, C. J., Jan 2019, In : Veterinary Microbiology. 228, p. 157-164 8 p.

Research output: Contribution to journalArticle

3 Scopus citations
Open Access

Effects of winter housing system on hygiene, udder health, frostbite, and rumination of dairy cows

Sjostrom, L. S., Heins, B. J., Endres, M. I., Moon, R. D. & Sorge, U. S., Nov 2019, In : Journal of Dairy Science. 102, 11, p. 10606-10615 10 p.

Research output: Contribution to journalArticle

Open Access

Enhancing nutrient utilization of broiler chickens through supplemental enzymes

Woyengo, T. A., Bogota, K. J., Noll, S. L. & Wilson, J., Mar 1 2019, In : Poultry science. 98, 3, p. 1302-1309 8 p.

Research output: Contribution to journalArticle

Open Access
5 Scopus citations
Open Access

Estimation of Actual and Ideal Bodyweight Using Morphometric Measurements of Miniature, Saddle-Type, and Thoroughbred Horses

Catalano, D. N., Coleman, R. J., Hathaway, M. R., Neu, A. E., Wagner, E. L., Tyler, P. J., McCue, M. E. & Martinson, K. L., Jul 2019, In : Journal of Equine Veterinary Science. 78, p. 117-122 6 p.

Research output: Contribution to journalArticle

1 Scopus citations

Evaluation of mouse enteroids as a model for Lawsonia intracellularis infection

Resende, T. P., Medida, R. L., Guo, Y., Vannucci, F. A., Saqui-Salces, M. & Gebhart, C., Jul 19 2019, In : Veterinary research. 50, 1, 57.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations

Evolutionary trends in host physiology outweigh dietary niche in structuring primate gut microbiomes

Amato, K. R., G. Sanders, J., Song, S. J., Nute, M., Metcalf, J. L., Thompson, L. R., Morton, J. T., Amir, A., J. McKenzie, V., Humphrey, G., Gogul, G., Gaffney, J., L. Baden, A., A.O. Britton, G., P. Cuozzo, F., Di Fiore, A., J. Dominy, N., L. Goldberg, T., Gomez, A., Kowalewski, M. M. & 9 others, J. Lewis, R., Link, A., L. Sauther, M., Tecot, S., A. White, B., E. Nelson, K., M. Stumpf, R., Knight, R. & R. Leigh, S., Mar 1 2019, In : ISME Journal. 13, 3, p. 576-587 12 p.

Research output: Contribution to journalArticle

Open Access
53 Scopus citations

Functional annotation and Bayesian fine-mapping reveals candidate genes for important agronomic traits in Holstein bulls

Jiang, J., Cole, J. B., Freebern, E., Da, Y., VanRaden, P. M. & Ma, L., Dec 1 2019, In : Communications biology. 2, 1, 212.

Research output: Contribution to journalArticle

Open Access
8 Scopus citations

Genome changes due to artificial selection in U.S. Holstein cattle

Ma, L., Sonstegard, T. S., Cole, J. B., Vantassell, C. P., Wiggans, G. R., Crooker, B. A., Tan, C., Prakapenka, D., Liu, G. E. & Da, Y., Feb 11 2019, In : BMC Genomics. 20, 1, 128.

Research output: Contribution to journalArticle

Open Access
8 Scopus citations