Experimental data of Pseudomonas putida biofilm development experiments in flat and rough microfluidic channels

This dataset consists of the codes, experimental data, and raw images of the Pseudomonas putida biofilm development experiments. They are all collected in the Saint Anthony Falls Laboratory at the University of Minnesota. The codes are used for processing the raw images to calculate the biofilm thickness. The experimental data file contains the experiment parameters and the data after processing. The image file contains the raw images collected using the Nikon confocal microscope.

Description
The images file contains the raw images collected using Nikon confocal microscope. The codes are used for processing these raw images to calculate the biofilm thickness. The experimental data file contains the experiment parameter and the data after processing.

Funding information
Sponsorship: This study was supported by Judy Yang's startup funds and University of Minnesota's MnDRIVE Environment seed grant.