DCAN-Labs/CABINET: BIDS-ified CABINET Application

  • Greg Conan (Creator)
  • Audrey Houghton (Creator)
  • Timothy J. Hendrickson (Creator)
  • Dimitrios Alexopoulos (Creator)
  • Mathias Goncalves (Creator)
  • Sanju Koirala (Creator)
  • Aidan Latham (Creator)
  • Erik Lee (Creator)
  • Jacob Lundquist (Creator)
  • Thomas J. Madison (Creator)
  • Christopher J. Markiewicz (Creator)
  • Lucille A. Moore (Creator)
  • Julia Moser (Creator)
  • Paul Reiners (Creator)
  • Amanda R Rueter (Creator)
  • Damien A. Fair (Creator)
  • Eric Feczko (Creator)



This BIDS App provides the utility of creating a nnU-Net anatomical MRI segmentation and mask with a infant brain trained model for the purposes of circumventing JLF within Nibabies.

This application utilities the following software: nvidia/pytorch:21.11-py3, nnU-Net, SynthSeg, FSL v6.0.5.1, ANTS v2.3.3, BIBSnet v1.0.0


Date made available2022

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